Ss1.1-Mixc-0029m03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGGCCCCAGGTGAAGAGAGCCGACGAGTGGAAGGACCCCTGGCGCCGGTCCAAGTCTC CCAAGAAGAAACTCGGGGTGTCCGTCTCCCCCAGCCGGGCTCGGCGGCGTCGGAAAACAT CCGCCTCCTCAGCCTCTGCCTCCAACTCCTCCAGGTCGTCGTCTCGGTCGTCCTCCTACT CTGGCTCTGGCTCCTCCCGGTCCCGGTCCCGGTCCTCGTCCTACAGCTCCTACTCCAGCC GGTCTTCCAGACACAGCTCATTCTCAGGCAGCCGGTCCAGGTCCCGGTCCTTCTCCTCGT CCCCGTCCGCGTCCCCGACGCCTTCCCCTCACAGGCCTCTCAGAACCAAGGGGGAGCCAG CTCCGCCTCCCGCCAAGGCCGGAGAGAAGCTGGTAAAGAAGCCAGCCCTGCCACCAGCCC CACCGCAGGCCCCCAAAACCACGGCTCCAGCCCCTGAGCCCGCCAAGCCCGGAGACCCCC GGGAAGCCAGGAGGAGGGAGCGGCAGACCAGGACCCCCCCCAGGAGGCGGACAGTCAGCG GCAGCGGCAGCGGCAGCAGCTACAGTGGCTCCAGCTCCAGATCCAGGTCCCTGAGTGTGA GCAGCGTGTCCTCGGTGTCCAGCGCCACGTCGAGCAGCAGCTCCGCGCACAGCGTGGACT CGGACGACATGTACGCCGACCTGGCCAGCCCCGTGTCCTCCGCCAGCTCGCGGTCCCCCA CCCCAGCCCAGACCAAGAAGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGGCCCCAGGTGAAGAGAGCCGACGAGTGGAAGGACCCCTGGCGCCGGTCCAAGTCTC CCAAGAAGAAACTCGGGGTGTCCGTCTCCCCCAGCCGGGCTCGGCGGCGTCGGAAAACAT CCGCCTCCTCAGCCTCTGCCTCCAACTCCTCCAGGTCGTCGTCTCGGTCGTCCTCCTACT CTGGCTCTGGCTCCTCCCGGTCCCGGTCCCGGTCCTCGTCCTACAGCTCCTACTCCAGCC GGTCTTCCAGACACAGCTCATTCTCAGGCAGCCGGTCCAGGTCCCGGTCCTTCTCCTCGT CCCCGTCCGCGTCCCCGACGCCTTCCCCTCACAGGCCTCTCAGAACCAAGGGGGAGCCAG CTCCGCCTCCCGCCAAGGCCGGAGAGAAGCTGGTAAAGAAGCCAGCCCTGCCACCAGCCC CACCGCAGGCCCCCAAAACCACGGCTCCAGCCCCTGAGCCCGCCAAGCCCGGAGACCCCC GGGAAGCCAGGAGGAGGGAGCGGCAGACCAGGACCCCCCCCAGGAGGCGGACAGTCAGCG GCAGCGGCAGCGGCAGCAGCTACAGTGGCTCCAGCTCCAGATCCAGGTCCCTGAGTGTGA GCAGCGTGTCCTCGGTGTCCAGCGCCACGTCGAGCAGCAGCTCCGCGCACAGCGTGGACT CGGACGACATGTACGCCGACCTGGCCAGCCCCGTGTCCTCCGCCAGCTCGCGGTCCCCCA CCCCAGCCCAGACCAAGAAGGAGA |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr18 (12714974-12714819) | |
| 1-156, gnl|Hg17|chr16 (87216144-87216299) | |
| 1-156, gnl|Mm7|chr8 (121049375-121049530) | |
| 584-744, gnl|bosTau2|chr18 (12710109-12709949) | |
| 584-744, gnl|canFam2|chr5 (67709046-67708862) | |
| 584-744, gnl|danRer3|chr18 (18266807-18266645) | |
| 584-744, gnl|dasNov1|scaffold_30002 (14093-14277) | |
| 584-744, gnl|fr1|chrUn (305718256-305718090) | |
| 584-744, gnl|galGal2|chr11 (18732534-18732720) | |
| 584-744, gnl|hg17|chr16 (87221515-87221697) | |
| 584-744, gnl|Hg17|chr16 (87221528-87221688) | |
| 584-744, gnl|loxAfr1|scaffold_56311 (4314-4135) | |
| 584-744, gnl|mm7|chr8 (121054979-121055161) | |
| 584-744, gnl|Mm7|chr8 (121054992-121055152) | |
| 584-744, gnl|monDom2|scaffold_23 (8579574-8579393) | |
| 584-744, gnl|oryCun1|scaffold_158799 (5043-5225) | |
| 584-744, gnl|panTro1|chr18 (82221816-82221998) | |
| 584-744, gnl|rheMac2|chr20 (86781781-86781963) | |
| 584-744, gnl|rn3|chr19 (52692173-52692355) | |
| 584-744, gnl|tetNig1|chrUn_random (17896299-17896135) | |
| 584-744, gnl|xenTro1|scaffold_1104 (277523-277333) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr18 (12714974-12714819) | |
| 1-156, gnl|Hg17|chr16 (87216144-87216299) | |
| 1-156, gnl|Mm7|chr8 (121049375-121049530) | |
| 584-744, gnl|bosTau2|chr18 (12710109-12709949) | |
| 584-744, gnl|canFam2|chr5 (67709046-67708862) | |
| 584-744, gnl|danRer3|chr18 (18266807-18266645) | |
| 584-744, gnl|dasNov1|scaffold_30002 (14093-14277) | |
| 584-744, gnl|fr1|chrUn (305718256-305718090) | |
| 584-744, gnl|galGal2|chr11 (18732534-18732720) | |
| 584-744, gnl|hg17|chr16 (87221515-87221697) | |
| 584-744, gnl|Hg17|chr16 (87221528-87221688) | |
| 584-744, gnl|loxAfr1|scaffold_56311 (4314-4135) | |
| 584-744, gnl|mm7|chr8 (121054979-121055161) | |
| 584-744, gnl|Mm7|chr8 (121054992-121055152) | |
| 584-744, gnl|monDom2|scaffold_23 (8579574-8579393) | |
| 584-744, gnl|oryCun1|scaffold_158799 (5043-5225) | |
| 584-744, gnl|panTro1|chr18 (82221816-82221998) | |
| 584-744, gnl|rheMac2|chr20 (86781781-86781963) | |
| 584-744, gnl|rn3|chr19 (52692173-52692355) | |
| 584-744, gnl|tetNig1|chrUn_random (17896299-17896135) | |
| 584-744, gnl|xenTro1|scaffold_1104 (277523-277333) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| jca (0.11396) | |
| cty (0.10408) |