Non-Coding RNA Search

Ss1.1-Mixc-0029m24.3

Sequence:


               
               GGAGGCCGCGGAGGATGGAGGAGCGGAAAGAGGAGGGCGAGGCCGAGATCCAGGAGCACG
GGCCCGAGCACTGGTTTTCCAAGTGGGAGCGGCAGTGCCTGGCCGAGGCGGAGCAGGACG
AGCAGCTGCCCCCCGAGCTGCAGGAGGAGGCGGCGGCCGCCGCGCAGCCCGAGCACAAGC
AGCAGAAACTGTGGCACCTCTTCCAGAACTCGGCCACCGCCGTGGCCCAGCTCTACAAAG
ACCGAGTGTGTCAGCAGCCAGGACTTTCTCTCTGGGTCCCCTTCCAAAACGCAGCCACCG
CTGTCACCAACCTCTACAAAGAAAGCGTGGATACCCATCAGCGAAGTTTTGATATTGGAA
TTCAGATTGGCTATCAGCGACGCAATAAGGATGTGTTGGCTTGGGTTAAAAAGCGCAGAA
GAACTATTCGTAGAGAAGATTTGATCAGCTTCCTGTGTGGAAAAGTTCCTCCACCACGAA
ACTCTAGAGCTCCCCCAAGACTGACTGTAGTGTCCCCTAACCGAGCTACTTCAACGGAAA
CTAGCTCATCTGTAGAGACTGATTTGCAACCCTTCCGGGAAGCCATAGCTCTGCATGGTC
TTAGTGGTGCAATGGCTAGTATAAGCGTGCGTTCGAGTACCCCAGGCTCTCCTACACATG
TAAGCAGTGGATCGAATGCTAGTCGAAGGAGAAATGGACTCCATGATGTCGATTTGAACA
CTTTCATATCAGAAGAAATGGCACTCCACTTGGACAATGGTGGAACTAGAAAGCGTACCT
CAGCCCAGTGTGGCGATGTCATTACAGACTCACCAACCCATAAACGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCCGCGGAGGATGGAGGAGCGGAAAGAGGAGGGCGAGGCCGAGATCCAGGAGCACG
GGCCCGAGCACTGGTTTTCCAAGTGGGAGCGGCAGTGCCTGGCCGAGGCGGAGCAGGACG
AGCAGCTGCCCCCCGAGCTGCAGGAGGAGGCGGCGGCCGCCGCGCAGCCCGAGCACAAGC
AGCAGAAACTGTGGCACCTCTTCCAGAACTCGGCCACCGCCGTGGCCCAGCTCTACAAAG
ACCGAGTGTGTCAGCAGCCAGGACTTTCTCTCTGGGTCCCCTTCCAAAACGCAGCCACCG
CTGTCACCAACCTCTACAAAGAAAGCGTGGATACCCATCAGCGAAGTTTTGATATTGGAA
TTCAGATTGGCTATCAGCGACGCAATAAGGATGTGTTGGCTTGGGTTAAAAAGCGCAGAA
GAACTATTCGTAGAGAAGATTTGATCAGCTTCCTGTGTGGAAAAGTTCCTCCACCACGAA
ACTCTAGAGCTCCCCCAAGACTGACTGTAGTGTCCCCTAACCGAGCTACTTCAACGGAAA
CTAGCTCATCTGTAGAGACTGATTTGCAACCCTTCCGGGAAGCCATAGCTCTGCATGGTC
TTAGTGGTGCAATGGCTAGTATAAGCGTGCGTTCGAGTACCCCAGGCTCTCCTACACATG
TAAGCAGTGGATCGAATGCTAGTCGAAGGAGAAATGGACTCCATGATGTCGATTTGAACA
CTTTCATATCAGAAGAAATGGCACTCCACTTGGACAATGGTGGAACTAGAAAGCGTACCT
CAGCCCAGTGTGGCGATGTCATTACAGACTCACCAACCCATAAACGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9D905_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9D905_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-240, - strand, RNAz p=0.943491
               

               
               392-511, + strand, RNAz p=0.591941

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-240, - strand, RNAz p=0.943491
               

               
               392-511, + strand, RNAz p=0.591941

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-240, gnl|bosTau2|chr25 (8055813-8055574)
               

               
               1-240, gnl|Hg17|chr16 (9093389-9093628)
               

               
               1-240, gnl|Mm7|chr16 (8502821-8503060)
               


               
               313-599, gnl|bosTau2|chr25 (8044860-8044575)
               

               
               313-599, gnl|Hg17|chr16 (9104334-9104619)
               

               
               313-599, gnl|Mm7|chr16 (8515336-8515621)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr25 (8055813-8055574)
               

               
               1-240, gnl|Hg17|chr16 (9093389-9093628)
               

               
               1-240, gnl|Mm7|chr16 (8502821-8503060)
               


               
               313-599, gnl|bosTau2|chr25 (8044860-8044575)
               

               
               313-599, gnl|Hg17|chr16 (9104334-9104619)
               

               
               313-599, gnl|Mm7|chr16 (8515336-8515621)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               tes (0.415628)
               

               
               cje (0.165235)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cje (0.165235)

	120-240, - strand, RNAz p=0.943491
	392-511, + strand, RNAz p=0.591941

	1-240, gnl\|bosTau2\|chr25 (8055813-8055574)
	1-240, gnl\|Hg17\|chr16 (9093389-9093628)
	1-240, gnl\|Mm7\|chr16 (8502821-8503060)

	313-599, gnl\|bosTau2\|chr25 (8044860-8044575)
	313-599, gnl\|Hg17\|chr16 (9104334-9104619)
	313-599, gnl\|Mm7\|chr16 (8515336-8515621)