Non-Coding RNA Search

Ss1.1-Mixc-0029n07.3

Sequence:


               
               TGTGAAGCAGCTGTACGCGCTGGTGTGCGAGACGCAACGCTACTCCGCTGTGCTGGACGC
CGTGATCGCCAGCGCCGGCCTCCTCCGCGCAGAGAAGAAGCTGCGGCCGCACCTGGCCAA
GGTGCTAGTGTACGAACTGTTACTTGGAAGAGGCTTTAAAGGGCATGGGGGCCGATGGAA
GCCCCTGCTGGACCGGCACCAGGCAAGGCTGAAGGCTGAGTTGGCCCGGCTCAAGGTTCG
TCGAGGTGTGAGCCGGAACGAGGACCTGTTGGAGGTGGGATCCAAGTCTGACCCAGCCTC
CCAGGTGCCTCGATTTGTGCGGGTGAACACTCTGAAGACCCGCTCTGAGGATGTAGTTGA
TTATTTCAAGAGACAAGGTTTCTCTTACCAGGGCCAGGCTTCCAGCCTCGAGGACATAAG
GGCCCTCAAAGGGAAGTGTTTTCTTCTGGATCCCTTGCTGCCAGAGCTGCTTGTGTTTCC
AGCCCAAACAGATCTGCATGAACATCCACTGTACCAAGCTGGTCACCTCATCCTCCAAGA
CAAGGCCAGCTGTCTCCCAGCCGTGCTGCTGGCTCCTCCCCCGGGTTCCCATGTCATTGA
CGCATGCGCTGCCCCAGGCAATAAGACCAGTCACTTGGCTGCTCTTCTCAAGAACCAAGG
GAAGATCTTTGCCTTTGACCTGGATGCCAAGCGGCTGGCGTCTATGGCCACCCTGCTGGC
CCGAGCTGGGGTGTCTTGCTGCGAGCTGGCCGAGCAGGACTTCCTGGCGGTCGCACCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAAGCAGCTGTACGCGCTGGTGTGCGAGACGCAACGCTACTCCGCTGTGCTGGACGC
CGTGATCGCCAGCGCCGGCCTCCTCCGCGCAGAGAAGAAGCTGCGGCCGCACCTGGCCAA
GGTGCTAGTGTACGAACTGTTACTTGGAAGAGGCTTTAAAGGGCATGGGGGCCGATGGAA
GCCCCTGCTGGACCGGCACCAGGCAAGGCTGAAGGCTGAGTTGGCCCGGCTCAAGGTTCG
TCGAGGTGTGAGCCGGAACGAGGACCTGTTGGAGGTGGGATCCAAGTCTGACCCAGCCTC
CCAGGTGCCTCGATTTGTGCGGGTGAACACTCTGAAGACCCGCTCTGAGGATGTAGTTGA
TTATTTCAAGAGACAAGGTTTCTCTTACCAGGGCCAGGCTTCCAGCCTCGAGGACATAAG
GGCCCTCAAAGGGAAGTGTTTTCTTCTGGATCCCTTGCTGCCAGAGCTGCTTGTGTTTCC
AGCCCAAACAGATCTGCATGAACATCCACTGTACCAAGCTGGTCACCTCATCCTCCAAGA
CAAGGCCAGCTGTCTCCCAGCCGTGCTGCTGGCTCCTCCCCCGGGTTCCCATGTCATTGA
CGCATGCGCTGCCCCAGGCAATAAGACCAGTCACTTGGCTGCTCTTCTCAAGAACCAAGG
GAAGATCTTTGCCTTTGACCTGGATGCCAAGCGGCTGGCGTCTATGGCCACCCTGCTGGC
CCGAGCTGGGGTGTCTTGCTGCGAGCTGGCCGAGCAGGACTTCCTGGCGGTCGCACCCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55628700|ref|XP_519138.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55628700|ref|XP_519138.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               117-296, gnl|bosTau2|chr25 (28290727-28290906)
               

               
               117-296, gnl|Hg17|chr7 (72166410-72166231)
               

               
               117-296, gnl|Mm7|chr5 (134342516-134342695)
               


               
               403-545, gnl|bosTau2|chr25 (28293046-28293188)
               

               
               403-545, gnl|Hg17|chr7 (72163748-72163606)
               

               
               403-545, gnl|Mm7|chr5 (134345231-134345373)
               


               
               660-778, gnl|bosTau2|chr25 (28293761-28293879)
               

               
               660-778, gnl|Hg17|chr7 (72163057-72162939)
               

               
               660-778, gnl|Mm7|chr5 (134346206-134346324)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-296, gnl|bosTau2|chr25 (28290727-28290906)
               

               
               117-296, gnl|Hg17|chr7 (72166410-72166231)
               

               
               117-296, gnl|Mm7|chr5 (134342516-134342695)
               


               
               403-545, gnl|bosTau2|chr25 (28293046-28293188)
               

               
               403-545, gnl|Hg17|chr7 (72163748-72163606)
               

               
               403-545, gnl|Mm7|chr5 (134345231-134345373)
               


               
               660-778, gnl|bosTau2|chr25 (28293761-28293879)
               

               
               660-778, gnl|Hg17|chr7 (72163057-72162939)
               

               
               660-778, gnl|Mm7|chr5 (134346206-134346324)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	117-296, gnl\|bosTau2\|chr25 (28290727-28290906)
	117-296, gnl\|Hg17\|chr7 (72166410-72166231)
	117-296, gnl\|Mm7\|chr5 (134342516-134342695)

	403-545, gnl\|bosTau2\|chr25 (28293046-28293188)
	403-545, gnl\|Hg17\|chr7 (72163748-72163606)
	403-545, gnl\|Mm7\|chr5 (134345231-134345373)

	660-778, gnl\|bosTau2\|chr25 (28293761-28293879)
	660-778, gnl\|Hg17\|chr7 (72163057-72162939)
	660-778, gnl\|Mm7\|chr5 (134346206-134346324)