Ss1.1-Mixc-0030,c13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTCACCTCTGGCTTTTATTCCCTTTTCGGCAGGGCCGAGGAACTGCATTGGGCAGACG TTTGCCATGACAGAGATGAAGGTGGTCCTGGCACTCACACTGCTGCGCTTCCGCGTCCTG CCAGATGAGGAGGAGCCGCGCAGGAAGCCAGAGCTGATACTGCGGGCAGAGGGTGGCCTT TGGCTGCGGGTGGAGCCGCTGCGTGGAGGCCAGCAGTGACCCACCACCTCCTGGCCTGGG GTCTACCCTAACCCTAGACACTTCACTTTGTGGAGTCCCAGGAATAAAACTGTGCTGAAC CAGCAGGGGGCTCTTGGGTCTCATGAGGATCCAGGGGGGCGGGTGTAGCTGAGAAGGTGG AGGACTGGGATGGAGGGCAATACTGACATGGGAGTGGGGTCAGGAGGACAGAACTACTCT TTAGGGAAGGTGGAGCAGAGAGCTAGATACAGAGGACCTGGATCCACCGCTCCTTGCCAT TAGACTACCAAAGTTACCATCCCTGTCTGCCATTTACTAGCTGTTTTGCTTGGGGAAATT GTTTATCTTTCTAAGGCTTAGTTCCTTTATTACAGAATGGTAGCCACCTTCTTGCACTGT TGTTGGGATTGAATAAGCAAGCCTGTCTCAAACGACTGAGTCAGTATCTGATAAATGTCA GTACTCAATAGGGGTGAATTTCCTTCCTATTTCTTGCATTGCTTTCTCAAATTAAAATGT TTTAAAACCCTCCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTCACCTCTGGCTTTTATTCCCTTTTCGGCAGGGCCGAGGAACTGCATTGGGCAGACG TTTGCCATGACAGAGATGAAGGTGGTCCTGGCACTCACACTGCTGCGCTTCCGCGTCCTG CCAGATGAGGAGGAGCCGCGCAGGAAGCCAGAGCTGATACTGCGGGCAGAGGGTGGCCTT TGGCTGCGGGTGGAGCCGCTGCGTGGAGGCCAGCAGTGACCCACCACCTCCTGGCCTGGG GTCTACCCTAACCCTAGACACTTCACTTTGTGGAGTCCCAGGAATAAAACTGTGCTGAAC CAGCAGGGGGCTCTTGGGTCTCATGAGGATCCAGGGGGGCGGGTGTAGCTGAGAAGGTGG AGGACTGGGATGGAGGGCAATACTGACATGGGAGTGGGGTCAGGAGGACAGAACTACTCT TTAGGGAAGGTGGAGCAGAGAGCTAGATACAGAGGACCTGGATCCACCGCTCCTTGCCAT TAGACTACCAAAGTTACCATCCCTGTCTGCCATTTACTAGCTGTTTTGCTTGGGGAAATT GTTTATCTTTCTAAGGCTTAGTTCCTTTATTACAGAATGGTAGCCACCTTCTTGCACTGT TGTTGGGATTGAATAAGCAAGCCTGTCTCAAACGACTGAGTCAGTATCTGATAAATGTCA GTACTCAATAGGGGTGAATTTCCTTCCTATTTCTTGCATTGCTTTCTCAAATTAAAATGT TTTAAAACCCTCCAAAAAAAAAAA |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 40-292, gnl|bosTau2|chr7 (6657326-6657577) | |
| 40-292, gnl|canFam2|chr20 (49649051-49648879) | |
| 40-292, gnl|canFam2|chr20 (49648871-49649058) | |
| 40-292, gnl|danRer3|chr22 (5327747-5327893) | |
| 40-292, gnl|dasNov1|scaffold_43230 (2532-2360) | |
| 40-292, gnl|dasNov1|scaffold_65526 (2826-3024) | |
| 40-292, gnl|echTel1|scaffold_55560 (1136-1309) | |
| 40-292, gnl|echTel1|scaffold_55560 (1317-1126) | |
| 40-292, gnl|hg17|chr19 (15556368-15556540) | |
| 40-292, gnl|hg17|chr19 (15885543-15885733) | |
| 40-292, gnl|Hg17|chr19 (15885721-15885495) | |
| 40-292, gnl|loxAfr1|scaffold_28807 (17213-17385) | |
| 40-292, gnl|loxAfr1|scaffold_28807 (17393-17213) | |
| 40-292, gnl|mm7|chr17 (30727433-30727605) | |
| 40-292, gnl|mm7|chr17 (30879030-30878842) | |
| 40-292, gnl|monDom2|scaffold_100 (1760689-1760851) | |
| 40-292, gnl|monDom2|scaffold_100 (1635911-1636077) | |
| 40-292, gnl|oryCun1|scaffold_96644 (12495-12667) | |
| 40-292, gnl|oryCun1|scaffold_96644 (12675-12485) | |
| 40-292, gnl|panTro1|chr20 (16261019-16261191) | |
| 40-292, gnl|panTro1|chr20 (16564536-16564726) | |
| 40-292, gnl|rheMac2|chr19 (15178049-15178221) | |
| 40-292, gnl|rheMac2|chr19 (15465691-15465881) | |
| 40-292, gnl|rn3|chr7 (13110878-13111050) | |
| 40-292, gnl|rn3|chr7 (13282103-13281915) | |
| 40-292, gnl|tetNig1|chrUn_random (130520417-130520613) | |
| 40-292, gnl|tetNig1|chrUn_random (130520618-130520407) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-292, gnl|bosTau2|chr7 (6657326-6657577) | |
| 40-292, gnl|canFam2|chr20 (49649051-49648879) | |
| 40-292, gnl|canFam2|chr20 (49648871-49649058) | |
| 40-292, gnl|danRer3|chr22 (5327747-5327893) | |
| 40-292, gnl|dasNov1|scaffold_43230 (2532-2360) | |
| 40-292, gnl|dasNov1|scaffold_65526 (2826-3024) | |
| 40-292, gnl|echTel1|scaffold_55560 (1136-1309) | |
| 40-292, gnl|echTel1|scaffold_55560 (1317-1126) | |
| 40-292, gnl|hg17|chr19 (15556368-15556540) | |
| 40-292, gnl|hg17|chr19 (15885543-15885733) | |
| 40-292, gnl|Hg17|chr19 (15885721-15885495) | |
| 40-292, gnl|loxAfr1|scaffold_28807 (17213-17385) | |
| 40-292, gnl|loxAfr1|scaffold_28807 (17393-17213) | |
| 40-292, gnl|mm7|chr17 (30727433-30727605) | |
| 40-292, gnl|mm7|chr17 (30879030-30878842) | |
| 40-292, gnl|monDom2|scaffold_100 (1760689-1760851) | |
| 40-292, gnl|monDom2|scaffold_100 (1635911-1636077) | |
| 40-292, gnl|oryCun1|scaffold_96644 (12495-12667) | |
| 40-292, gnl|oryCun1|scaffold_96644 (12675-12485) | |
| 40-292, gnl|panTro1|chr20 (16261019-16261191) | |
| 40-292, gnl|panTro1|chr20 (16564536-16564726) | |
| 40-292, gnl|rheMac2|chr19 (15178049-15178221) | |
| 40-292, gnl|rheMac2|chr19 (15465691-15465881) | |
| 40-292, gnl|rn3|chr7 (13110878-13111050) | |
| 40-292, gnl|rn3|chr7 (13282103-13281915) | |
| 40-292, gnl|tetNig1|chrUn_random (130520417-130520613) | |
| 40-292, gnl|tetNig1|chrUn_random (130520618-130520407) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| sme (0.305437) | |
| nms (0.213858) | |
| sag (0.182715) | |
| cki (0.165235) | |
| nco (0.161734) | |
| ssp (0.13552) | |
| clu (0.119646) | |
| spc (0.113366) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| nms (0.213858) | |
| sag (0.182715) | |
| cki (0.165235) | |
| nco (0.161734) | |
| ssp (0.13552) | |
| clu (0.119646) | |
| spc (0.113366) |