Non-Coding RNA Search

Ss1.1-Mixc-0030,c20.3

Sequence:


               
               TTCCATGACAAGACTGTAGCTCAGTCACTAGTGGGTCTGGCGAGGTGGTAAATCAGAGGA
AGGATTTCTTTTTTAATCAAATACCACATTTAGCTCTATGTCATAAATATTAAGAAAAGT
GTTTTTTTTAAAACAAGGCAGATTGAAAATGTCTGCTGTCTGGTTTGTTTATACACAAAT
ATACAATAGAATGTCTTGCTAAGTGAAGAAGCCACTCCCGCTTATGGAGCCTCTTGTTAA
CATGCTTCTCTTTTGTGCAGCAGAGGCTCTCTAAAAGGAAACATGTTCTGTGGTGGGACT
CAGACACTCCCCACCCCTGGGCTGCAGGGGCAGAGACATGCTGAGGGACAGGCAGGTCCT
GGCCCCCTGCTCTCTGCCCATGTGCACAGACAGGACTCTGAGCTTGGTTAGGCCAGGTCT
AGGCTGGCGGGAGGAGAGGGGCATTCACACATGAGAACTCTCTCTGTTCGGAGTCTCATG
TGAGCCTATTGATTTCTCTACCTCATCTGTATAGCGAGTAGGTGTGTACTCGAGTGACTT
GGAGAATGTATTTATTTAATGGCCTTGTGTAACAGAACAGAAACAAATGGAAACACTAAA
TAAATGTATTTTTAAATTATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCATGACAAGACTGTAGCTCAGTCACTAGTGGGTCTGGCGAGGTGGTAAATCAGAGGA
AGGATTTCTTTTTTAATCAAATACCACATTTAGCTCTATGTCATAAATATTAAGAAAAGT
GTTTTTTTTAAAACAAGGCAGATTGAAAATGTCTGCTGTCTGGTTTGTTTATACACAAAT
ATACAATAGAATGTCTTGCTAAGTGAAGAAGCCACTCCCGCTTATGGAGCCTCTTGTTAA
CATGCTTCTCTTTTGTGCAGCAGAGGCTCTCTAAAAGGAAACATGTTCTGTGGTGGGACT
CAGACACTCCCCACCCCTGGGCTGCAGGGGCAGAGACATGCTGAGGGACAGGCAGGTCCT
GGCCCCCTGCTCTCTGCCCATGTGCACAGACAGGACTCTGAGCTTGGTTAGGCCAGGTCT
AGGCTGGCGGGAGGAGAGGGGCATTCACACATGAGAACTCTCTCTGTTCGGAGTCTCATG
TGAGCCTATTGATTTCTCTACCTCATCTGTATAGCGAGTAGGTGTGTACTCGAGTGACTT
GGAGAATGTATTTATTTAATGGCCTTGTGTAACAGAACAGAAACAAATGGAAACACTAAA
TAAATGTATTTTTAAATTATAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-431, + strand, RNAz p=0.982504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-431, + strand, RNAz p=0.982504

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               422-517, + strand, RNAmicro p=0.99979

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               422-517, + strand, RNAmicro p=0.99979

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-621, gnl|bosTau2|chr7 (1513774-1513170)
               

               
               1-621, gnl|Hg17|chr1 (224413653-224413092)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-621, gnl|bosTau2|chr7 (1513774-1513170)
               

               
               1-621, gnl|Hg17|chr1 (224413653-224413092)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-621, gnl\|bosTau2\|chr7 (1513774-1513170)
	1-621, gnl\|Hg17\|chr1 (224413653-224413092)