Ss1.1-Mixc-0030,e09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCGAAGGAGTCACTTTTGAGAGAAGACTTGGAACTGTTCTCCCTGTGATTGAAAAGGA AATTGATCCTGAAAACTTTACAGATATCATGGAAGAGACTGAAGAAAAAGCTGCAGATCG CCTTCTGTTTAGTTTTCTTACACTGATAAGTAAACTCATCAAGGAATGTAATATTATTCA GTTTACCAAGCCCTCTGAGACTCTAAGTAAAATCTGGAGCCACGTGCACTCTCACCTGAG ACATCCGCACAACTGGGTCTGGCTCACCGCAGCCCAGGTTTTCGGATTGCTCTTTGCCTC TTGCCAACCAGAGGAACTCATCAGAAAACGGAATGTTAAAAAAGCCAAAAAGAAACTCTC AGAACCGGTAGCAATCAGATTCCTCACAAATGATCTTGACCAAAAGATGAAAAGTATCTC CTTAGCGTCTTGCCATCAATTGCATTCCAAATTCTTGGATCAATCTCTAGGAGAGCAGGT TGTTAAGAATTTGTTGTTTGTAGCTAAAGTCTTGTATTTACTGGAACCTGGTTCTGGAGA TAAGCAAGGTGACATAAAAGATGACGTGGAAGAACAAGAAATTTTAGGTGACGGCATGAC CAGAGAGGATGTGGGAGAGCACATGGCCTGTGCAGATGAGAAGGAAGAGCTTGGCAAGCC AGCCACGCTGCTGTGGTTGATTCAGAAGTTGACCCGAATCGCAAAACTGGAAGCTGCTTA TTCACCAAGAAACCCCTTAAAGAGAACTTGCATCTTTAAGTTTCTTGGAGCCATAGCCAT GGATCTTGGGATGGACAAGGTGAAGCCGTATCTCCCAGTGATCATCGCTCCTTTGTTCCG GGAGCTGAACAGCACCTATTCGGACCAGGATCCTTCACTGAAGAATCTATCCCAGGAAAT CATAGAAATACTGAAAAAGCTGGTTGGGCTTGAGAGCTTCTCATTAGCCTTTGCCTCTGT ACAGAAACAGGCTAATGAGAAAAGGGCACTCCGGAAAAAGAGGAAGGCTTTAGAGTTTGT GACTAATCCTGATATTGCCGCGAAGAAAAAACTAAAGAAACACAAAAATAAAAGTGAAGC AAAGAAGAGAAAGATAGAGTTCCTACGTCCAGGATATAAGGCCAAGAGACAAAAGAGCCA CAGCCTAAAAAATTTAGCAATGGTGGAGTAAAGTGCTCCCTGTTATAACACTGTCTCACC TTACTCCAAAACGTGAGCTTTCTGATGTACCCACTGATCCAAAAATCATAGCAGGTTTAT TATTTAAGGTCTGGCATAGATTGTATATTATATAGTTTAATATAATTGTGCTTATTTTTT AATTAAAATATTTTATACTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCGAAGGAGTCACTTTTGAGAGAAGACTTGGAACTGTTCTCCCTGTGATTGAAAAGGA AATTGATCCTGAAAACTTTACAGATATCATGGAAGAGACTGAAGAAAAAGCTGCAGATCG CCTTCTGTTTAGTTTTCTTACACTGATAAGTAAACTCATCAAGGAATGTAATATTATTCA GTTTACCAAGCCCTCTGAGACTCTAAGTAAAATCTGGAGCCACGTGCACTCTCACCTGAG ACATCCGCACAACTGGGTCTGGCTCACCGCAGCCCAGGTTTTCGGATTGCTCTTTGCCTC TTGCCAACCAGAGGAACTCATCAGAAAACGGAATGTTAAAAAAGCCAAAAAGAAACTCTC AGAACCGGTAGCAATCAGATTCCTCACAAATGATCTTGACCAAAAGATGAAAAGTATCTC CTTAGCGTCTTGCCATCAATTGCATTCCAAATTCTTGGATCAATCTCTAGGAGAGCAGGT TGTTAAGAATTTGTTGTTTGTAGCTAAAGTCTTGTATTTACTGGAACCTGGTTCTGGAGA TAAGCAAGGTGACATAAAAGATGACGTGGAAGAACAAGAAATTTTAGGTGACGGCATGAC CAGAGAGGATGTGGGAGAGCACATGGCCTGTGCAGATGAGAAGGAAGAGCTTGGCAAGCC AGCCACGCTGCTGTGGTTGATTCAGAAGTTGACCCGAATCGCAAAACTGGAAGCTGCTTA TTCACCAAGAAACCCCTTAAAGAGAACTTGCATCTTTAAGTTTCTTGGAGCCATAGCCAT GGATCTTGGGATGGACAAGGTGAAGCCGTATCTCCCAGTGATCATCGCTCCTTTGTTCCG GGAGCTGAACAGCACCTATTCGGACCAGGATCCTTCACTGAAGAATCTATCCCAGGAAAT CATAGAAATACTGAAAAAGCTGGTTGGGCTTGAGAGCTTCTCATTAGCCTTTGCCTCTGT ACAGAAACAGGCTAATGAGAAAAGGGCACTCCGGAAAAAGAGGAAGGCTTTAGAGTTTGT GACTAATCCTGATATTGCCGCGAAGAAAAAACTAAAGAAACACAAAAATAAAAGTGAAGC AAAGAAGAGAAAGATAGAGTTCCTACGTCCAGGATATAAGGCCAAGAGACAAAAGAGCCA CAGCCTAAAAAATTTAGCAATGGTGGAGTAAAGTGCTCCCTGTTATAACACTGTCTCACC TTACTCCAAAACGTGAGCTTTCTGATGTACCCACTGATCCAAAAATCATAGCAGGTTTAT TATTTAAGGTCTGGCATAGATTGTATATTATATAGTTTAATATAATTGTGCTTATTTTTT AATTAAAATATTTTATACTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 86-204, + strand, RNAz p=0.575052 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 86-204, + strand, RNAz p=0.575052 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 86-219, gnl|bosTau2|chr5 (41674449-41674316) | |
| 86-219, gnl|canFam2|chr15 (43389781-43389934) | |
| 86-219, gnl|danRer3|chrUn (6685858-6685719) | |
| 86-219, gnl|dasNov1|scaffold_5045 (15211-15364) | |
| 86-219, gnl|echTel1|scaffold_320773 (25635-25482) | |
| 86-219, gnl|galGal2|chr1 (44456750-44456896) | |
| 86-219, gnl|hg17|chr12 (100271858-100272011) | |
| 86-219, gnl|Hg17|chr12 (100271870-100272003) | |
| 86-219, gnl|mm7|chr10 (88311825-88311672) | |
| 86-219, gnl|Mm7|chr10 (88311811-88311678) | |
| 86-219, gnl|monDom2|scaffold_34 (11967079-11966928) | |
| 86-219, gnl|panTro1|chr10 (102724924-102725077) | |
| 86-219, gnl|rheMac2|chr11 (102577400-102577552) | |
| 86-219, gnl|rn3|chr7 (25446867-25446714) | |
| 86-219, gnl|xenTro1|scaffold_230 (460597-460446) | |
| 221-419, gnl|bosTau2|chr5 (41672313-41672115) | |
| 221-419, gnl|canFam2|chr15 (43391316-43391527) | |
| 221-419, gnl|danRer3|chrUn (6685285-6685096) | |
| 221-419, gnl|echTel1|scaffold_320773 (23652-23441) | |
| 221-419, gnl|fr1|chrUn (73318448-73318247) | |
| 221-419, gnl|galGal2|chr1 (44457635-44457856) | |
| 221-419, gnl|hg17|chr12 (100275594-100275805) | |
| 221-419, gnl|Hg17|chr12 (100275619-100275817) | |
| 221-419, gnl|loxAfr1|scaffold_114680 (1130-1341) | |
| 221-419, gnl|mm7|chr10 (88310328-88310118) | |
| 221-419, gnl|Mm7|chr10 (88310302-88310104) | |
| 221-419, gnl|monDom2|scaffold_34 (11966458-11966249) | |
| 221-419, gnl|oryCun1|scaffold_202211 (39381-39170) | |
| 221-419, gnl|panTro1|chr10 (102728664-102728875) | |
| 221-419, gnl|rheMac2|chr11 (102581061-102581272) | |
| 221-419, gnl|rn3|chr7 (25445064-25444858) | |
| 221-419, gnl|xenTro1|scaffold_230 (459718-459524) | |
| 477-742, gnl|bosTau2|chr5 (41667990-41667737) | |
| 477-742, gnl|Hg17|chr12 (100279285-100279559) | |
| 477-742, gnl|Mm7|chr10 (88308315-88308032) | |
| 1009-1340, gnl|bosTau2|chr5 (41665893-41665558) | |
| 1009-1340, gnl|Hg17|chr12 (100282207-100282862) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-219, gnl|bosTau2|chr5 (41674449-41674316) | |
| 86-219, gnl|canFam2|chr15 (43389781-43389934) | |
| 86-219, gnl|danRer3|chrUn (6685858-6685719) | |
| 86-219, gnl|dasNov1|scaffold_5045 (15211-15364) | |
| 86-219, gnl|echTel1|scaffold_320773 (25635-25482) | |
| 86-219, gnl|galGal2|chr1 (44456750-44456896) | |
| 86-219, gnl|hg17|chr12 (100271858-100272011) | |
| 86-219, gnl|Hg17|chr12 (100271870-100272003) | |
| 86-219, gnl|mm7|chr10 (88311825-88311672) | |
| 86-219, gnl|Mm7|chr10 (88311811-88311678) | |
| 86-219, gnl|monDom2|scaffold_34 (11967079-11966928) | |
| 86-219, gnl|panTro1|chr10 (102724924-102725077) | |
| 86-219, gnl|rheMac2|chr11 (102577400-102577552) | |
| 86-219, gnl|rn3|chr7 (25446867-25446714) | |
| 86-219, gnl|xenTro1|scaffold_230 (460597-460446) | |
| 221-419, gnl|bosTau2|chr5 (41672313-41672115) | |
| 221-419, gnl|canFam2|chr15 (43391316-43391527) | |
| 221-419, gnl|danRer3|chrUn (6685285-6685096) | |
| 221-419, gnl|echTel1|scaffold_320773 (23652-23441) | |
| 221-419, gnl|fr1|chrUn (73318448-73318247) | |
| 221-419, gnl|galGal2|chr1 (44457635-44457856) | |
| 221-419, gnl|hg17|chr12 (100275594-100275805) | |
| 221-419, gnl|Hg17|chr12 (100275619-100275817) | |
| 221-419, gnl|loxAfr1|scaffold_114680 (1130-1341) | |
| 221-419, gnl|mm7|chr10 (88310328-88310118) | |
| 221-419, gnl|Mm7|chr10 (88310302-88310104) | |
| 221-419, gnl|monDom2|scaffold_34 (11966458-11966249) | |
| 221-419, gnl|oryCun1|scaffold_202211 (39381-39170) | |
| 221-419, gnl|panTro1|chr10 (102728664-102728875) | |
| 221-419, gnl|rheMac2|chr11 (102581061-102581272) | |
| 221-419, gnl|rn3|chr7 (25445064-25444858) | |
| 221-419, gnl|xenTro1|scaffold_230 (459718-459524) | |
| 477-742, gnl|bosTau2|chr5 (41667990-41667737) | |
| 477-742, gnl|Hg17|chr12 (100279285-100279559) | |
| 477-742, gnl|Mm7|chr10 (88308315-88308032) | |
| 1009-1340, gnl|bosTau2|chr5 (41665893-41665558) | |
| 1009-1340, gnl|Hg17|chr12 (100282207-100282862) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| pro (0.512033) | |
| gul (0.177588) | |
| ski (0.146735) | |
| ste (0.135208) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| gul (0.177588) | |
| ski (0.146735) | |
| ste (0.135208) | |
| ecc (0.115035) | |
| ldo (0.0970026) |