Non-Coding RNA Search

Ss1.1-Mixc-0030,k13.3

Sequence:


               
               ACCGATACCCAGAACACCTGCTCACTTGCCTGCTGGGCCTGGCATTTTCTGAGTACTTTC
CAACAGAGCTCATAGATTTCGCTTTGAGTCCAGGGTTTGTCAGGTTAGCTCAGGAGAGAA
GTAAGTTTGAAGTCACTAAGGAGCTGTATACTCTTGATGGTACAGTTGGCATTGAGTGTC
CAGATTATAGAGGCAATCGCCTTAGTTCTGATCTTCAGCAAGAGGGGTCAGAAATGCTGT
GGAATTTAGCAAAGAAGGATATGAGCGCAAAGCCCGAATTCCTAGAAGCTCTCTTTTTAC
TTCAGACCATGCTGGGTGGGCCCCAGTACATCAAACACCATATGATTTTGCCTCATACTC
GATCCTCCGATTTAGAGGTTCAGCTTGATGTTAACATGAAGCCATTACCGTTTAACAGAG
AAGCCACACCGATTGAAGATGTAGCCCAATTAAGGCTTAAGCATGTGGGAATCAGCCTTA
CAGATGATTTGATGAGTCAGCTACTACAAGGGAGAGCAAGAGGACACTCCCAGAGGGAAA
CAGAGTCAGACACTGGGCAGCAGCCCATGAAATTAGAGGCGGCGTCCATTCCTGTTGGGG
GCTCCTTTTGCAATATGGCTGACAGATTGGGGGCCATGGAGATGGCTGGCCCGTGTCCTC
CAGCTTCCGTGCAGGCGCCAAAACTGAAGCTGGCTATTCAGTTGACAAACAAGAACCAGT
ATTGCTATGGTTCCAGGCATCTGCTTGGACTGCACAACATGAAGAGGCGGCAGCTGAATC
AGCTTGGGTACCGTGTGGTGGAGTTATCCCACTGGGACTGGCTCCCGCTACTGAGACGAA
CTCGCTTAGAAAAGCTGGCATTCCTCCATGAGAAAGTGTTCACCTCTGCTCTCTGAAGGG
CCTTCAGAGTCATTTCAACTCACAGATGCTGGTGATGTGCACTGTGCCAGGTGTTGCGAA
AGTTATAAAAGCCAGAATGTAGGTTTGGTAATAAAATCATCCGTTGAGGAGACTTGGTTG
TGCTCTTGTCTGTGGCAGATGGAAGCCATGGCAAATGTTACTGTGATTGATTGTAACCCG
GTGCAGTTGTATACGTTGCTAATTTCTGCAGGTGAATAATAAACATCTTAAAATTTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGATACCCAGAACACCTGCTCACTTGCCTGCTGGGCCTGGCATTTTCTGAGTACTTTC
CAACAGAGCTCATAGATTTCGCTTTGAGTCCAGGGTTTGTCAGGTTAGCTCAGGAGAGAA
GTAAGTTTGAAGTCACTAAGGAGCTGTATACTCTTGATGGTACAGTTGGCATTGAGTGTC
CAGATTATAGAGGCAATCGCCTTAGTTCTGATCTTCAGCAAGAGGGGTCAGAAATGCTGT
GGAATTTAGCAAAGAAGGATATGAGCGCAAAGCCCGAATTCCTAGAAGCTCTCTTTTTAC
TTCAGACCATGCTGGGTGGGCCCCAGTACATCAAACACCATATGATTTTGCCTCATACTC
GATCCTCCGATTTAGAGGTTCAGCTTGATGTTAACATGAAGCCATTACCGTTTAACAGAG
AAGCCACACCGATTGAAGATGTAGCCCAATTAAGGCTTAAGCATGTGGGAATCAGCCTTA
CAGATGATTTGATGAGTCAGCTACTACAAGGGAGAGCAAGAGGACACTCCCAGAGGGAAA
CAGAGTCAGACACTGGGCAGCAGCCCATGAAATTAGAGGCGGCGTCCATTCCTGTTGGGG
GCTCCTTTTGCAATATGGCTGACAGATTGGGGGCCATGGAGATGGCTGGCCCGTGTCCTC
CAGCTTCCGTGCAGGCGCCAAAACTGAAGCTGGCTATTCAGTTGACAAACAAGAACCAGT
ATTGCTATGGTTCCAGGCATCTGCTTGGACTGCACAACATGAAGAGGCGGCAGCTGAATC
AGCTTGGGTACCGTGTGGTGGAGTTATCCCACTGGGACTGGCTCCCGCTACTGAGACGAA
CTCGCTTAGAAAAGCTGGCATTCCTCCATGAGAAAGTGTTCACCTCTGCTCTCTGAAGGG
CCTTCAGAGTCATTTCAACTCACAGATGCTGGTGATGTGCACTGTGCCAGGTGTTGCGAA
AGTTATAAAAGCCAGAATGTAGGTTTGGTAATAAAATCATCCGTTGAGGAGACTTGGTTG
TGCTCTTGTCTGTGGCAGATGGAAGCCATGGCAAATGTTACTGTGATTGATTGTAACCCG
GTGCAGTTGTATACGTTGCTAATTTCTGCAGGTGAATAATAAACATCTTAAAATTTCTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10440293|dbj|BAB15696.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10440293|dbj|BAB15696.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               960-1076, + strand, RNAz p=0.667178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               960-1076, + strand, RNAz p=0.667178

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1134, gnl|bosTau2|chr13 (34530975-34529848)
               

               
               3-1134, gnl|Hg17|chr20 (3076318-3075172)
               

               
               3-1134, gnl|Mm7|chr2 (130355991-130355044)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1134, gnl|bosTau2|chr13 (34530975-34529848)
               

               
               3-1134, gnl|Hg17|chr20 (3076318-3075172)
               

               
               3-1134, gnl|Mm7|chr2 (130355991-130355044)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cut (0.169924)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               kid (0.129735)

	3-1134, gnl\|bosTau2\|chr13 (34530975-34529848)
	3-1134, gnl\|Hg17\|chr20 (3076318-3075172)
	3-1134, gnl\|Mm7\|chr2 (130355991-130355044)

	cut (0.169924)
	cje (0.165235)
	lnt (0.142308)
	csk (0.140746)
	ute (0.132784)
	kid (0.129735)