Ss1.1-Mixc-0030,k22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCTCCCAGATGCTGTCCGCCCGCTTCAGTGGCAACCTGCTGGTTAGCCTGCTGGGCAC CTGGTCTGACACTTCTTCTGGTCCCCCAGCACGTGCTTATCCTGTTGGCGGCCTTTGCTA TTACCTGTCCCCTCCAGAGTCTTTTGGCTCTGTCTTGGAAGACCCCGTCCACGCCGTCGT GTACATAGTGTTTATGCTGGGCTCCTGTGCCTTCTTCTCCAAAACCTGGATTGAGGTCTC AGGCTCCTCTGCCAAGGATGTTGCAAAGCAGCTGAAGGAGCAGCAGATGGTGATGAGGGG CCACCGAGAGACCTCCATGGTCCATGAGCTCAATCGGTACATCCCCACTGCTGCGGCCTT TGGTGGGCTGTGCATCGGGGCCCTCTCCGTCCTGGCTGACTTCCTGGGCGCCATCGGGTC TGGAACTGGGATCCTGCTCGCGGTTACCATCATCTACCAGTACTTTGAGATCTTTGTAAA GGAGCAGAGCGAGGTTGGCAGCATGGGGGCCCTTCTCTTCTGAGCTGTGGCTCCTGGACC AGGCAGGCAGTGTGCTCTGCGGTGGCTGAAAAGGGAACAACGAAGCCACACTGTGGGTGC TTCTCTTGAGCGCTGCTGTGGCAGAGACTTGGGTTTAGTAACATGTTTGAACTTCATATT CTTTCATTCCACTTTCTAAAGTGCTCGAAATTTTCCAATTTGAAATTTTGCTTTTTACTC TGGCACTGGCATCAGAACTGTAGAAGTGAGGTCTTAAGCTGCCAGTGGTAGGGGTGCTGA GTGCCTGTGCCCAGGTCCATGTAACTTTTGTCGTAACCATTGCACCTTCTCGGCGCTGTA TGTGACTGCAGTGGTCTCAGCTGTTCCCCTTGAAGGGACTGTCTTACTGGTTAGAAGCAC AAACATTGTTGAAATGTCCCACCCTGGGTGCAGGAGGGCAGACGGCTGGGAGCAGGTCGG TTTTCTGGTGTGTGTGGGTCGCTCGCTGGTGGGTCCCCTTACAATCAGGGGCAGGAACAC CTGGCTTAAAACTGTTTCTCTGGAAAACACAATTGTTTTCCCTTTTTAAAGTAGTTTTTT AGGGCAGAGCTTCTTCCAAAAGAAAGGGATGAATGTCCAGAAGACACTCTTGGCTCATCT GCATGTTTTTCTACTTTTGCCTATTGGCTATTCTCCTTGGCTGGCCTGGTCGGGCTCTGC TGTCTCTGCTTTGCTAAGCCTGTGTCCTCTGCTGGAGCCAGGCCGCAATGCTGTAGCTTT GCAGAGTCACACGGCCATCGTGCAGAGGACCCCAAGTGGTCTGTGCAGTTCCTCTGCTGT CACTGGCTTTGCTCCTATGGTGTGTCCCCTTCCCACCTGGCCAAGGGGAAGCACCATGGC CAGCCTCAGATGCTACCTTCTAGGCTCAGGACTTCCCACTTGTATTTTCGGAATGTTTTT ACTGTGCTTATTAGGACCAAATGCAAGTGAAATAAATGACAAGACACCTCGGTCTGTCTG CATTTCAGCAGAACTGCCCAGCAGAGACGGCACAGGCACAGGCTCTAGATTCATGGTGAA ATCAGTGTCAGATTTTTTTTTTTTTTTTTTATGAGATTCTCCAATGTTTGCTATAAAAAA AAGACTCACAATTATGTATAAGTTGACCCAGACCTTAGGGCCCCTTGGGGACCAGCCACA CTCAGCAGCAGGATGGCAGTCAGGTGCTGCAGCCTGAGGGCTTCTCACCAGAGGACACCC CAGTTCTAAGTTGGGAACCCCAGGGGCTAGTGCAGTCCTGTGCTGAGATACCTCACCAGC AGCGGGCACACAATGGCCTTCAAAGCACAGAGCCAGCAGAGGTGGTAAACTTGGCACCCA TCTGAGTCCAGAGGGCCTGCAAGACCTTACTGGCCATGCCGCCTGCCTGGGAAACAGACC AGCCAACAAGAAGAGGCTTGCCTGATGTCACCTGGCAAGTCCGCAGAGAGCCAGGCAGGC CTGCGGACTGGGGCGTCCACCATACCATACGTGGCCTTGTCCGACCCAGTCCCGAGTGGA GACCTGACATGACCCCCACCCCCACTAGTCCTGCTGCAGCCTGACCACTGTGGCTCAGAT TCCTGCCCCACAGTCACTGGCTACGGAGCGGTGGTGGGAGTGAGGGCTGATCCTTAGCTT CCAGGGACTGTCACTGTGGACGCCAAAATGGCATAACAGATAAGGTGAATAAAGAGACAA ATAAAACCAACTTTTTACAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCTCCCAGATGCTGTCCGCCCGCTTCAGTGGCAACCTGCTGGTTAGCCTGCTGGGCAC CTGGTCTGACACTTCTTCTGGTCCCCCAGCACGTGCTTATCCTGTTGGCGGCCTTTGCTA TTACCTGTCCCCTCCAGAGTCTTTTGGCTCTGTCTTGGAAGACCCCGTCCACGCCGTCGT GTACATAGTGTTTATGCTGGGCTCCTGTGCCTTCTTCTCCAAAACCTGGATTGAGGTCTC AGGCTCCTCTGCCAAGGATGTTGCAAAGCAGCTGAAGGAGCAGCAGATGGTGATGAGGGG CCACCGAGAGACCTCCATGGTCCATGAGCTCAATCGGTACATCCCCACTGCTGCGGCCTT TGGTGGGCTGTGCATCGGGGCCCTCTCCGTCCTGGCTGACTTCCTGGGCGCCATCGGGTC TGGAACTGGGATCCTGCTCGCGGTTACCATCATCTACCAGTACTTTGAGATCTTTGTAAA GGAGCAGAGCGAGGTTGGCAGCATGGGGGCCCTTCTCTTCTGAGCTGTGGCTCCTGGACC AGGCAGGCAGTGTGCTCTGCGGTGGCTGAAAAGGGAACAACGAAGCCACACTGTGGGTGC TTCTCTTGAGCGCTGCTGTGGCAGAGACTTGGGTTTAGTAACATGTTTGAACTTCATATT CTTTCATTCCACTTTCTAAAGTGCTCGAAATTTTCCAATTTGAAATTTTGCTTTTTACTC TGGCACTGGCATCAGAACTGTAGAAGTGAGGTCTTAAGCTGCCAGTGGTAGGGGTGCTGA GTGCCTGTGCCCAGGTCCATGTAACTTTTGTCGTAACCATTGCACCTTCTCGGCGCTGTA TGTGACTGCAGTGGTCTCAGCTGTTCCCCTTGAAGGGACTGTCTTACTGGTTAGAAGCAC AAACATTGTTGAAATGTCCCACCCTGGGTGCAGGAGGGCAGACGGCTGGGAGCAGGTCGG TTTTCTGGTGTGTGTGGGTCGCTCGCTGGTGGGTCCCCTTACAATCAGGGGCAGGAACAC CTGGCTTAAAACTGTTTCTCTGGAAAACACAATTGTTTTCCCTTTTTAAAGTAGTTTTTT AGGGCAGAGCTTCTTCCAAAAGAAAGGGATGAATGTCCAGAAGACACTCTTGGCTCATCT GCATGTTTTTCTACTTTTGCCTATTGGCTATTCTCCTTGGCTGGCCTGGTCGGGCTCTGC TGTCTCTGCTTTGCTAAGCCTGTGTCCTCTGCTGGAGCCAGGCCGCAATGCTGTAGCTTT GCAGAGTCACACGGCCATCGTGCAGAGGACCCCAAGTGGTCTGTGCAGTTCCTCTGCTGT CACTGGCTTTGCTCCTATGGTGTGTCCCCTTCCCACCTGGCCAAGGGGAAGCACCATGGC CAGCCTCAGATGCTACCTTCTAGGCTCAGGACTTCCCACTTGTATTTTCGGAATGTTTTT ACTGTGCTTATTAGGACCAAATGCAAGTGAAATAAATGACAAGACACCTCGGTCTGTCTG CATTTCAGCAGAACTGCCCAGCAGAGACGGCACAGGCACAGGCTCTAGATTCATGGTGAA ATCAGTGTCAGATTTTTTTTTTTTTTTTTTATGAGATTCTCCAATGTTTGCTATAAAAAA AAGACTCACAATTATGTATAAGTTGACCCAGACCTTAGGGCCCCTTGGGGACCAGCCACA CTCAGCAGCAGGATGGCAGTCAGGTGCTGCAGCCTGAGGGCTTCTCACCAGAGGACACCC CAGTTCTAAGTTGGGAACCCCAGGGGCTAGTGCAGTCCTGTGCTGAGATACCTCACCAGC AGCGGGCACACAATGGCCTTCAAAGCACAGAGCCAGCAGAGGTGGTAAACTTGGCACCCA TCTGAGTCCAGAGGGCCTGCAAGACCTTACTGGCCATGCCGCCTGCCTGGGAAACAGACC AGCCAACAAGAAGAGGCTTGCCTGATGTCACCTGGCAAGTCCGCAGAGAGCCAGGCAGGC CTGCGGACTGGGGCGTCCACCATACCATACGTGGCCTTGTCCGACCCAGTCCCGAGTGGA GACCTGACATGACCCCCACCCCCACTAGTCCTGCTGCAGCCTGACCACTGTGGCTCAGAT TCCTGCCCCACAGTCACTGGCTACGGAGCGGTGGTGGGAGTGAGGGCTGATCCTTAGCTT CCAGGGACTGTCACTGTGGACGCCAAAATGGCATAACAGATAAGGTGAATAAAGAGACAA ATAAAACCAACTTTTTACAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 68-261, gnl|bosTau2|chr22 (47082653-47082460) | |
| 68-261, gnl|canFam2|chr20 (5087666-5087884) | |
| 68-261, gnl|danRer3|chrUn (106204365-106204148) | |
| 68-261, gnl|dasNov1|scaffold_39253 (13103-13320) | |
| 68-261, gnl|echTel1|scaffold_169947 (4331-4117) | |
| 68-261, gnl|fr1|chrUn (57791147-57790948) | |
| 68-261, gnl|galGal2|chr12 (9564094-9563876) | |
| 68-261, gnl|hg17|chr3 (129268942-129269161) | |
| 68-261, gnl|Hg17|chr3 (129268962-129269155) | |
| 68-261, gnl|loxAfr1|scaffold_8280 (38428-38646) | |
| 68-261, gnl|mm7|chr6 (88582046-88581828) | |
| 68-261, gnl|Mm7|chr6 (88582025-88581832) | |
| 68-261, gnl|monDom2|scaffold_5 (46623490-46623708) | |
| 68-261, gnl|oryCun1|scaffold_204444 (67782-67563) | |
| 68-261, gnl|panTro1|chr2 (131153500-131153719) | |
| 68-261, gnl|rheMac2|chr11 (86782326-86782107) | |
| 68-261, gnl|rn3|chr4 (122845646-122845428) | |
| 68-261, gnl|tetNig1|chr11 (1781365-1781584) | |
| 68-261, gnl|xenTro1|scaffold_72 (782190-782338) | |
| 336-1152, gnl|bosTau2|chr22 (47081005-47080193) | |
| 336-1152, gnl|Hg17|chr3 (129271016-129271853) | |
| 1364-1619, gnl|bosTau2|chr22 (47080022-47079780) | |
| 1364-1619, gnl|canFam2|chr20 (5090830-5091209) | |
| 1364-1619, gnl|dasNov1|scaffold_25298 (14994-15356) | |
| 1364-1619, gnl|echTel1|scaffold_169947 (1805-1471) | |
| 1364-1619, gnl|hg17|chr3 (129271965-129272350) | |
| 1364-1619, gnl|Hg17|chr3 (129272043-129272323) | |
| 1364-1619, gnl|loxAfr1|scaffold_8280 (41539-41889) | |
| 1364-1619, gnl|mm7|chr6 (88579706-88579481) | |
| 1364-1619, gnl|oryCun1|scaffold_198424 (187435-187034) | |
| 1364-1619, gnl|panTro1|chr2 (131156530-131156914) | |
| 1364-1619, gnl|rheMac2|chr11 (86779282-86778898) | |
| 1364-1619, gnl|rn3|chr4 (122843383-122843162) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-261, gnl|bosTau2|chr22 (47082653-47082460) | |
| 68-261, gnl|canFam2|chr20 (5087666-5087884) | |
| 68-261, gnl|danRer3|chrUn (106204365-106204148) | |
| 68-261, gnl|dasNov1|scaffold_39253 (13103-13320) | |
| 68-261, gnl|echTel1|scaffold_169947 (4331-4117) | |
| 68-261, gnl|fr1|chrUn (57791147-57790948) | |
| 68-261, gnl|galGal2|chr12 (9564094-9563876) | |
| 68-261, gnl|hg17|chr3 (129268942-129269161) | |
| 68-261, gnl|Hg17|chr3 (129268962-129269155) | |
| 68-261, gnl|loxAfr1|scaffold_8280 (38428-38646) | |
| 68-261, gnl|mm7|chr6 (88582046-88581828) | |
| 68-261, gnl|Mm7|chr6 (88582025-88581832) | |
| 68-261, gnl|monDom2|scaffold_5 (46623490-46623708) | |
| 68-261, gnl|oryCun1|scaffold_204444 (67782-67563) | |
| 68-261, gnl|panTro1|chr2 (131153500-131153719) | |
| 68-261, gnl|rheMac2|chr11 (86782326-86782107) | |
| 68-261, gnl|rn3|chr4 (122845646-122845428) | |
| 68-261, gnl|tetNig1|chr11 (1781365-1781584) | |
| 68-261, gnl|xenTro1|scaffold_72 (782190-782338) | |
| 336-1152, gnl|bosTau2|chr22 (47081005-47080193) | |
| 336-1152, gnl|Hg17|chr3 (129271016-129271853) | |
| 1364-1619, gnl|bosTau2|chr22 (47080022-47079780) | |
| 1364-1619, gnl|canFam2|chr20 (5090830-5091209) | |
| 1364-1619, gnl|dasNov1|scaffold_25298 (14994-15356) | |
| 1364-1619, gnl|echTel1|scaffold_169947 (1805-1471) | |
| 1364-1619, gnl|hg17|chr3 (129271965-129272350) | |
| 1364-1619, gnl|Hg17|chr3 (129272043-129272323) | |
| 1364-1619, gnl|loxAfr1|scaffold_8280 (41539-41889) | |
| 1364-1619, gnl|mm7|chr6 (88579706-88579481) | |
| 1364-1619, gnl|oryCun1|scaffold_198424 (187435-187034) | |
| 1364-1619, gnl|panTro1|chr2 (131156530-131156914) | |
| 1364-1619, gnl|rheMac2|chr11 (86779282-86778898) | |
| 1364-1619, gnl|rn3|chr4 (122843383-122843162) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| cga (0.837287) | |
| csp (0.644745) | |
| cly (0.482567) | |
| clu (0.478583) | |
| lnt (0.426925) | |
| fli (0.405762) | |
| ute (0.398353) | |
| elu (0.385356) | |
| nep (0.36785) | |
| duo (0.345602) | |
| eye (0.341006) | |
| cag (0.302389) | |
| eep (0.245128) | |
| ece (0.229305) | |
| jej (0.197844) | |
| eje (0.197668) | |
| col (0.195008) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.837287) | |
| csp (0.644745) | |
| cly (0.482567) | |
| clu (0.478583) | |
| lnt (0.426925) | |
| fli (0.405762) | |
| ute (0.398353) | |
| elu (0.385356) | |
| nep (0.36785) | |
| duo (0.345602) | |
| eye (0.341006) | |
| cag (0.302389) | |
| eep (0.245128) | |
| ece (0.229305) | |
| jej (0.197844) | |
| eje (0.197668) | |
| col (0.195008) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |