Ss1.1-Mixc-0030,p17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTGAAGAGCAATAATTTATTAGTATCTTCAGAGCCCAGCA GAGAGCGAGGAGCCCAGGCCTGGGCCTCTACGTCCACAGCTCCCCCAGCGGCTTCTGCGC AGCGGCCCGGATGGTGTCCTCAGACAGCGCTCGGATTTCCCCGTGGACGTCCTCAATGCT TCGGGAAGCGTCGACCGTCTTCCAGGGCAGGGTCACGTCCCCCATGAGCTGCTGGAAGCG CTGCAGCGCCCGCTGCTGGAAGGCCCCGCTCTCATAGCGCTCCAGGCCAAAGCCGCCCCG GGCAGCCGCCTCTGCCAGCTGCAGCTCCAGGAAGACCACCAGGTCCGGCTTGGGGAGGCC CGCGTCCGGCTGCTTGCACCAGTCCAGGGAAAAGTTCTCCTTGGCGCTGGTGAAGGCGAC CCCAGAAAAGGCGTATCTGTCCACGACCAGGGTGATACCCTGGCTCAACTTCTCCTTAAT TAATGGCACGTGTTCCCAGCGGTTTGCGGAGAAAAGCAGGTGCACGGAGTGATCCTCCAC CTCGCTTTTCTTTTCCAAGTAGGAAGCCAGGAGCTTGCCAATTTCAGTTGACCTCTCCGG GAAGCGCAGGAGCTCGGCGCGGTGGCCCGCGGCGCACAGCGCGTCCACCAGCTTGCGGCT CTGCGTGCTCTTCCCCGCGCGGTCCACACCCTCCAGTACGATGAGAGCCCCGCGCCGGCC CGCCATCTCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTGAAGAGCAATAATTTATTAGTATCTTCAGAGCCCAGCA GAGAGCGAGGAGCCCAGGCCTGGGCCTCTACGTCCACAGCTCCCCCAGCGGCTTCTGCGC AGCGGCCCGGATGGTGTCCTCAGACAGCGCTCGGATTTCCCCGTGGACGTCCTCAATGCT TCGGGAAGCGTCGACCGTCTTCCAGGGCAGGGTCACGTCCCCCATGAGCTGCTGGAAGCG CTGCAGCGCCCGCTGCTGGAAGGCCCCGCTCTCATAGCGCTCCAGGCCAAAGCCGCCCCG GGCAGCCGCCTCTGCCAGCTGCAGCTCCAGGAAGACCACCAGGTCCGGCTTGGGGAGGCC CGCGTCCGGCTGCTTGCACCAGTCCAGGGAAAAGTTCTCCTTGGCGCTGGTGAAGGCGAC CCCAGAAAAGGCGTATCTGTCCACGACCAGGGTGATACCCTGGCTCAACTTCTCCTTAAT TAATGGCACGTGTTCCCAGCGGTTTGCGGAGAAAAGCAGGTGCACGGAGTGATCCTCCAC CTCGCTTTTCTTTTCCAAGTAGGAAGCCAGGAGCTTGCCAATTTCAGTTGACCTCTCCGG GAAGCGCAGGAGCTCGGCGCGGTGGCCCGCGGCGCACAGCGCGTCCACCAGCTTGCGGCT CTGCGTGCTCTTCCCCGCGCGGTCCACACCCTCCAGTACGATGAGAGCCCCGCGCCGGCC CGCCATCTCCGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 87 entry(ies) | More info |
| Aligned organism(s): 87 entry(ies) | Help | Less info |
| 199-398, gnl|bosTau2|chr14 (8142827-8143026) | |
| 199-398, gnl|canFam2|chr25 (54455509-54455741) | |
| 199-398, gnl|canFam2|chr25 (54455509-54455741) | |
| 199-398, gnl|echTel1|scaffold_22581 (1099-902) | |
| 199-398, gnl|echTel1|scaffold_22581 (1099-902) | |
| 199-398, gnl|fr1|chrUn (247391893-247391678) | |
| 199-398, gnl|fr1|chrUn (247391893-247391678) | |
| 199-398, gnl|galGal2|chr9 (8827446-8827674) | |
| 199-398, gnl|galGal2|chr9 (8827446-8827674) | |
| 199-398, gnl|hg17|chr2 (242337858-242338083) | |
| 199-398, gnl|Hg17|chr2 (242337857-242338056) | |
| 199-398, gnl|hg17|chr2_random (328251-328476) | |
| 199-398, gnl|loxAfr1|scaffold_19868 (11629-11403) | |
| 199-398, gnl|loxAfr1|scaffold_19868 (11629-11403) | |
| 199-398, gnl|mm7|chr1 (93702536-93702753) | |
| 199-398, gnl|mm7|chr1 (93702536-93702753) | |
| 199-398, gnl|Mm7|chr1 (93702535-93702734) | |
| 199-398, gnl|monDom2|scaffold_162 (1488390-1488142) | |
| 199-398, gnl|monDom2|scaffold_162 (1488390-1488142) | |
| 199-398, gnl|oryCun1|scaffold_195303 (8359-8589) | |
| 199-398, gnl|oryCun1|scaffold_195303 (8359-8589) | |
| 199-398, gnl|panTro1|chr13 (133981513-133981738) | |
| 199-398, gnl|panTro1|chr13 (133981513-133981738) | |
| 199-398, gnl|rheMac2|chr12 (105598465-105598690) | |
| 199-398, gnl|rheMac2|chr12 (105598465-105598690) | |
| 199-398, gnl|rn3|chr9 (93272198-93272431) | |
| 199-398, gnl|rn3|chr9 (93272198-93272431) | |
| 199-398, gnl|tetNig1|chrUn_random (88737140-88737339) | |
| 199-398, gnl|tetNig1|chrUn_random (88737140-88737339) | |
| 199-398, gnl|xenTro1|scaffold_209 (1598255-1598048) | |
| 199-398, gnl|xenTro1|scaffold_209 (1598255-1598048) | |
| 487-597, gnl|bosTau2|chr14 (8147599-8147709) | |
| 487-597, gnl|dasNov1|scaffold_167995 (2136-2018) | |
| 487-597, gnl|dasNov1|scaffold_167995 (2136-2018) | |
| 487-597, gnl|echTel1|scaffold_22581 (808-690) | |
| 487-597, gnl|echTel1|scaffold_22581 (808-690) | |
| 487-597, gnl|fr1|chrUn (247390946-247390824) | |
| 487-597, gnl|fr1|chrUn (247390946-247390824) | |
| 487-597, gnl|galGal2|chr9 (8829561-8829668) | |
| 487-597, gnl|galGal2|chr9 (8829561-8829668) | |
| 487-597, gnl|hg17|chr2 (242345174-242345292) | |
| 487-597, gnl|Hg17|chr2 (242345173-242345283) | |
| 487-597, gnl|hg17|chr2_random (335567-335685) | |
| 487-597, gnl|loxAfr1|scaffold_19868 (9249-9131) | |
| 487-597, gnl|loxAfr1|scaffold_19868 (9249-9131) | |
| 487-597, gnl|mm7|chr1 (93708611-93708729) | |
| 487-597, gnl|mm7|chr1 (93708611-93708729) | |
| 487-597, gnl|Mm7|chr1 (93708610-93708720) | |
| 487-597, gnl|monDom2|scaffold_162 (1487138-1487020) | |
| 487-597, gnl|monDom2|scaffold_162 (1487138-1487020) | |
| 487-597, gnl|oryCun1|scaffold_195303 (12946-13060) | |
| 487-597, gnl|oryCun1|scaffold_195303 (12946-13060) | |
| 487-597, gnl|panTro1|chr13 (133826422-133826540) | |
| 487-597, gnl|panTro1|chr13 (133826422-133826540) | |
| 487-597, gnl|rheMac2|chr12 (105606105-105606223) | |
| 487-597, gnl|rheMac2|chr12 (105606105-105606223) | |
| 487-597, gnl|rn3|chr9 (93277557-93277675) | |
| 487-597, gnl|rn3|chr9 (93277557-93277675) | |
| 487-597, gnl|tetNig1|chrUn_random (88738432-88738543) | |
| 487-597, gnl|tetNig1|chrUn_random (88738432-88738543) | |
| 599-732, gnl|bosTau2|chr14 (8148762-8148895) | |
| 599-732, gnl|dasNov1|scaffold_167995 (918-783) | |
| 599-732, gnl|dasNov1|scaffold_167995 (918-783) | |
| 599-732, gnl|echTel1|scaffold_22581 (689-569) | |
| 599-732, gnl|echTel1|scaffold_22581 (689-569) | |
| 599-732, gnl|fr1|chrUn (247390688-247390557) | |
| 599-732, gnl|fr1|chrUn (247390688-247390557) | |
| 599-732, gnl|hg17|chr2 (242346055-242346194) | |
| 599-732, gnl|Hg17|chr2 (242346061-242346194) | |
| 599-732, gnl|hg17|chr2_random (336448-336587) | |
| 599-732, gnl|loxAfr1|scaffold_19868 (8263-8129) | |
| 599-732, gnl|loxAfr1|scaffold_19868 (8263-8129) | |
| 599-732, gnl|mm7|chr1 (93709503-93709637) | |
| 599-732, gnl|mm7|chr1 (93709503-93709637) | |
| 599-732, gnl|Mm7|chr1 (93709509-93709640) | |
| 599-732, gnl|monDom2|scaffold_162 (1485657-1485518) | |
| 599-732, gnl|monDom2|scaffold_162 (1485657-1485518) | |
| 599-732, gnl|oryCun1|scaffold_195303 (13620-13756) | |
| 599-732, gnl|oryCun1|scaffold_195303 (13620-13756) | |
| 599-732, gnl|panTro1|chr13 (133827304-133827443) | |
| 599-732, gnl|panTro1|chr13 (133827304-133827443) | |
| 599-732, gnl|rheMac2|chr12 (105606992-105607131) | |
| 599-732, gnl|rheMac2|chr12 (105606992-105607131) | |
| 599-732, gnl|rn3|chr9 (93278578-93278712) | |
| 599-732, gnl|rn3|chr9 (93278578-93278712) | |
| 599-732, gnl|tetNig1|chrUn_random (88738626-88738760) | |
| 599-732, gnl|tetNig1|chrUn_random (88738626-88738760) |
| Aligned organism(s): 87 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-398, gnl|bosTau2|chr14 (8142827-8143026) | |
| 199-398, gnl|canFam2|chr25 (54455509-54455741) | |
| 199-398, gnl|canFam2|chr25 (54455509-54455741) | |
| 199-398, gnl|echTel1|scaffold_22581 (1099-902) | |
| 199-398, gnl|echTel1|scaffold_22581 (1099-902) | |
| 199-398, gnl|fr1|chrUn (247391893-247391678) | |
| 199-398, gnl|fr1|chrUn (247391893-247391678) | |
| 199-398, gnl|galGal2|chr9 (8827446-8827674) | |
| 199-398, gnl|galGal2|chr9 (8827446-8827674) | |
| 199-398, gnl|hg17|chr2 (242337858-242338083) | |
| 199-398, gnl|Hg17|chr2 (242337857-242338056) | |
| 199-398, gnl|hg17|chr2_random (328251-328476) | |
| 199-398, gnl|loxAfr1|scaffold_19868 (11629-11403) | |
| 199-398, gnl|loxAfr1|scaffold_19868 (11629-11403) | |
| 199-398, gnl|mm7|chr1 (93702536-93702753) | |
| 199-398, gnl|mm7|chr1 (93702536-93702753) | |
| 199-398, gnl|Mm7|chr1 (93702535-93702734) | |
| 199-398, gnl|monDom2|scaffold_162 (1488390-1488142) | |
| 199-398, gnl|monDom2|scaffold_162 (1488390-1488142) | |
| 199-398, gnl|oryCun1|scaffold_195303 (8359-8589) | |
| 199-398, gnl|oryCun1|scaffold_195303 (8359-8589) | |
| 199-398, gnl|panTro1|chr13 (133981513-133981738) | |
| 199-398, gnl|panTro1|chr13 (133981513-133981738) | |
| 199-398, gnl|rheMac2|chr12 (105598465-105598690) | |
| 199-398, gnl|rheMac2|chr12 (105598465-105598690) | |
| 199-398, gnl|rn3|chr9 (93272198-93272431) | |
| 199-398, gnl|rn3|chr9 (93272198-93272431) | |
| 199-398, gnl|tetNig1|chrUn_random (88737140-88737339) | |
| 199-398, gnl|tetNig1|chrUn_random (88737140-88737339) | |
| 199-398, gnl|xenTro1|scaffold_209 (1598255-1598048) | |
| 199-398, gnl|xenTro1|scaffold_209 (1598255-1598048) | |
| 487-597, gnl|bosTau2|chr14 (8147599-8147709) | |
| 487-597, gnl|dasNov1|scaffold_167995 (2136-2018) | |
| 487-597, gnl|dasNov1|scaffold_167995 (2136-2018) | |
| 487-597, gnl|echTel1|scaffold_22581 (808-690) | |
| 487-597, gnl|echTel1|scaffold_22581 (808-690) | |
| 487-597, gnl|fr1|chrUn (247390946-247390824) | |
| 487-597, gnl|fr1|chrUn (247390946-247390824) | |
| 487-597, gnl|galGal2|chr9 (8829561-8829668) | |
| 487-597, gnl|galGal2|chr9 (8829561-8829668) | |
| 487-597, gnl|hg17|chr2 (242345174-242345292) | |
| 487-597, gnl|Hg17|chr2 (242345173-242345283) | |
| 487-597, gnl|hg17|chr2_random (335567-335685) | |
| 487-597, gnl|loxAfr1|scaffold_19868 (9249-9131) | |
| 487-597, gnl|loxAfr1|scaffold_19868 (9249-9131) | |
| 487-597, gnl|mm7|chr1 (93708611-93708729) | |
| 487-597, gnl|mm7|chr1 (93708611-93708729) | |
| 487-597, gnl|Mm7|chr1 (93708610-93708720) | |
| 487-597, gnl|monDom2|scaffold_162 (1487138-1487020) | |
| 487-597, gnl|monDom2|scaffold_162 (1487138-1487020) | |
| 487-597, gnl|oryCun1|scaffold_195303 (12946-13060) | |
| 487-597, gnl|oryCun1|scaffold_195303 (12946-13060) | |
| 487-597, gnl|panTro1|chr13 (133826422-133826540) | |
| 487-597, gnl|panTro1|chr13 (133826422-133826540) | |
| 487-597, gnl|rheMac2|chr12 (105606105-105606223) | |
| 487-597, gnl|rheMac2|chr12 (105606105-105606223) | |
| 487-597, gnl|rn3|chr9 (93277557-93277675) | |
| 487-597, gnl|rn3|chr9 (93277557-93277675) | |
| 487-597, gnl|tetNig1|chrUn_random (88738432-88738543) | |
| 487-597, gnl|tetNig1|chrUn_random (88738432-88738543) | |
| 599-732, gnl|bosTau2|chr14 (8148762-8148895) | |
| 599-732, gnl|dasNov1|scaffold_167995 (918-783) | |
| 599-732, gnl|dasNov1|scaffold_167995 (918-783) | |
| 599-732, gnl|echTel1|scaffold_22581 (689-569) | |
| 599-732, gnl|echTel1|scaffold_22581 (689-569) | |
| 599-732, gnl|fr1|chrUn (247390688-247390557) | |
| 599-732, gnl|fr1|chrUn (247390688-247390557) | |
| 599-732, gnl|hg17|chr2 (242346055-242346194) | |
| 599-732, gnl|Hg17|chr2 (242346061-242346194) | |
| 599-732, gnl|hg17|chr2_random (336448-336587) | |
| 599-732, gnl|loxAfr1|scaffold_19868 (8263-8129) | |
| 599-732, gnl|loxAfr1|scaffold_19868 (8263-8129) | |
| 599-732, gnl|mm7|chr1 (93709503-93709637) | |
| 599-732, gnl|mm7|chr1 (93709503-93709637) | |
| 599-732, gnl|Mm7|chr1 (93709509-93709640) | |
| 599-732, gnl|monDom2|scaffold_162 (1485657-1485518) | |
| 599-732, gnl|monDom2|scaffold_162 (1485657-1485518) | |
| 599-732, gnl|oryCun1|scaffold_195303 (13620-13756) | |
| 599-732, gnl|oryCun1|scaffold_195303 (13620-13756) | |
| 599-732, gnl|panTro1|chr13 (133827304-133827443) | |
| 599-732, gnl|panTro1|chr13 (133827304-133827443) | |
| 599-732, gnl|rheMac2|chr12 (105606992-105607131) | |
| 599-732, gnl|rheMac2|chr12 (105606992-105607131) | |
| 599-732, gnl|rn3|chr9 (93278578-93278712) | |
| 599-732, gnl|rn3|chr9 (93278578-93278712) | |
| 599-732, gnl|tetNig1|chrUn_random (88738626-88738760) | |
| 599-732, gnl|tetNig1|chrUn_random (88738626-88738760) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| elu (0.385356) | |
| cly (0.241284) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| ecc (0.115035) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cly (0.241284) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| ecc (0.115035) |