Ss1.1-Mixc-0030,p21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAAAAATAATGTCCTGTGGTATGGATCACTCTCTTAAACTTTGGAGGATTAATTCAAA GAGAATGATGAATGCAATTAAGGAATCTTATGATTATAACCCAAATAAAACTAACAGGCC ATTTATTTCTCAGAAAATTCACTTTCCTGACTTTTCTACCAGAGACATACATAGAAATTA TGTCGATTGTGTGCGATGGTTAGGTGATTTGATACTTTCCAAGTCTTGTGAAAACGCCAT TGTGTGCTGGAAACCTGGCAAAATGGAAGATGATATAGATAAAATTAAACCCAGTGAGTC TAATGTGACTATTCTTGGGCGATTTGATTACAGCCAGTGTGACATTTGGTACATGAGGTT TTCTATGGATTTCTGGCAAAAGATGCTTGCATTGGGCAATCAAGTTGGTAAACTTTATGT TTGGGATTTAGAAGTAGAAGATCCTCATAAAGCCAAATGTACAACACTGACTCATCATAA ATGTGGTGCTGCTATTCGACAAACCAGTTTTAGTAGAGATAGCAGCATTCTTATAGCTGT TTGTGATGATGCCAGTATTTGGCGCTGGGACAGACTTCGATAAAATACTTTTTCCCAATC AAAATCAGTGTGTTTTCTGTGTACATTAGAACTAATGTATCTTGCTAGTAAAGGCACATA GAGCAATTTAGAATTGTCTTTCAGCATTCAATCAGGCTGAGCTGAATGTAGTGATGTTTA CATTGTTTACACTCTTTGTACTGTCTCCTGCTCAGATTCTACTGCTTTTAATAAAAATTT ATTTTTGTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAAAAATAATGTCCTGTGGTATGGATCACTCTCTTAAACTTTGGAGGATTAATTCAAA GAGAATGATGAATGCAATTAAGGAATCTTATGATTATAACCCAAATAAAACTAACAGGCC ATTTATTTCTCAGAAAATTCACTTTCCTGACTTTTCTACCAGAGACATACATAGAAATTA TGTCGATTGTGTGCGATGGTTAGGTGATTTGATACTTTCCAAGTCTTGTGAAAACGCCAT TGTGTGCTGGAAACCTGGCAAAATGGAAGATGATATAGATAAAATTAAACCCAGTGAGTC TAATGTGACTATTCTTGGGCGATTTGATTACAGCCAGTGTGACATTTGGTACATGAGGTT TTCTATGGATTTCTGGCAAAAGATGCTTGCATTGGGCAATCAAGTTGGTAAACTTTATGT TTGGGATTTAGAAGTAGAAGATCCTCATAAAGCCAAATGTACAACACTGACTCATCATAA ATGTGGTGCTGCTATTCGACAAACCAGTTTTAGTAGAGATAGCAGCATTCTTATAGCTGT TTGTGATGATGCCAGTATTTGGCGCTGGGACAGACTTCGATAAAATACTTTTTCCCAATC AAAATCAGTGTGTTTTCTGTGTACATTAGAACTAATGTATCTTGCTAGTAAAGGCACATA GAGCAATTTAGAATTGTCTTTCAGCATTCAATCAGGCTGAGCTGAATGTAGTGATGTTTA CATTGTTTACACTCTTTGTACTGTCTCCTGCTCAGATTCTACTGCTTTTAATAAAAATTT ATTTTTGTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-118, + strand, RNAz p=0.567996 | |
| 457-575, - strand, RNAz p=0.597731 | |
| 650-791, + strand, RNAz p=0.837557 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-118, + strand, RNAz p=0.567996 | |
| 457-575, - strand, RNAz p=0.597731 | |
| 650-791, + strand, RNAz p=0.837557 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC068995, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-118, gnl|bosTau2|chr29 (5307670-5307787) | |
| 1-118, gnl|canFam2|chr21 (16269936-16269783) | |
| 1-118, gnl|canFam2|chr21 (16269936-16269809) | |
| 1-118, gnl|danRer3|chrNA (62975343-62975495) | |
| 1-118, gnl|danRer3|chrNA (62975343-62975470) | |
| 1-118, gnl|dasNov1|scaffold_20258 (4171-4305) | |
| 1-118, gnl|dasNov1|scaffold_95809 (3959-4112) | |
| 1-118, gnl|echTel1|scaffold_250390 (924-795) | |
| 1-118, gnl|echTel1|scaffold_250390 (924-791) | |
| 1-118, gnl|fr1|chrUn (128214471-128214608) | |
| 1-118, gnl|fr1|chrUn (128214471-128214598) | |
| 1-118, gnl|galGal2|chrUn (146994098-146994245) | |
| 1-118, gnl|galGal2|chrUn (146994098-146994229) | |
| 1-118, gnl|hg17|chr11 (85654774-85654927) | |
| 1-118, gnl|Hg17|chr11 (85654790-85654907) | |
| 1-118, gnl|hg17|chrX (139205422-139205552) | |
| 1-118, gnl|loxAfr1|scaffold_187122 (789-636) | |
| 1-118, gnl|loxAfr1|scaffold_187122 (789-655) | |
| 1-118, gnl|mm7|chr7 (85913298-85913160) | |
| 1-118, gnl|mm7|chr7 (85913297-85913164) | |
| 1-118, gnl|Mm7|chr7 (85913280-85913163) | |
| 1-118, gnl|monDom2|scaffold_46 (1333831-1333674) | |
| 1-118, gnl|monDom2|scaffold_46 (1330399-1330280) | |
| 1-118, gnl|panTro1|chr9 (87303312-87303466) | |
| 1-118, gnl|panTro1|chr9 (87303314-87303443) | |
| 1-118, gnl|rheMac2|chr14 (84594431-84594584) | |
| 1-118, gnl|rheMac2|chrX (138669745-138669875) | |
| 1-118, gnl|rn3|chr1 (146652630-146652489) | |
| 1-118, gnl|rn3|chr1 (146652629-146652502) | |
| 1-118, gnl|tetNig1|chr3 (107662-107799) | |
| 1-118, gnl|tetNig1|chr3 (107662-107789) | |
| 1-118, gnl|xenTro1|scaffold_195 (1499981-1499832) | |
| 1-118, gnl|xenTro1|scaffold_195 (1499981-1499854) | |
| 216-382, gnl|bosTau2|chr29 (5319717-5319883) | |
| 216-382, gnl|Hg17|chr11 (85665662-85665828) | |
| 216-382, gnl|Mm7|chr7 (85904853-85904690) | |
| 457-791, gnl|bosTau2|chr29 (5320974-5321308) | |
| 457-791, gnl|Hg17|chr11 (85667089-85667429) | |
| 457-791, gnl|Mm7|chr7 (85903498-85903166) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-118, gnl|bosTau2|chr29 (5307670-5307787) | |
| 1-118, gnl|canFam2|chr21 (16269936-16269783) | |
| 1-118, gnl|canFam2|chr21 (16269936-16269809) | |
| 1-118, gnl|danRer3|chrNA (62975343-62975495) | |
| 1-118, gnl|danRer3|chrNA (62975343-62975470) | |
| 1-118, gnl|dasNov1|scaffold_20258 (4171-4305) | |
| 1-118, gnl|dasNov1|scaffold_95809 (3959-4112) | |
| 1-118, gnl|echTel1|scaffold_250390 (924-795) | |
| 1-118, gnl|echTel1|scaffold_250390 (924-791) | |
| 1-118, gnl|fr1|chrUn (128214471-128214608) | |
| 1-118, gnl|fr1|chrUn (128214471-128214598) | |
| 1-118, gnl|galGal2|chrUn (146994098-146994245) | |
| 1-118, gnl|galGal2|chrUn (146994098-146994229) | |
| 1-118, gnl|hg17|chr11 (85654774-85654927) | |
| 1-118, gnl|Hg17|chr11 (85654790-85654907) | |
| 1-118, gnl|hg17|chrX (139205422-139205552) | |
| 1-118, gnl|loxAfr1|scaffold_187122 (789-636) | |
| 1-118, gnl|loxAfr1|scaffold_187122 (789-655) | |
| 1-118, gnl|mm7|chr7 (85913298-85913160) | |
| 1-118, gnl|mm7|chr7 (85913297-85913164) | |
| 1-118, gnl|Mm7|chr7 (85913280-85913163) | |
| 1-118, gnl|monDom2|scaffold_46 (1333831-1333674) | |
| 1-118, gnl|monDom2|scaffold_46 (1330399-1330280) | |
| 1-118, gnl|panTro1|chr9 (87303312-87303466) | |
| 1-118, gnl|panTro1|chr9 (87303314-87303443) | |
| 1-118, gnl|rheMac2|chr14 (84594431-84594584) | |
| 1-118, gnl|rheMac2|chrX (138669745-138669875) | |
| 1-118, gnl|rn3|chr1 (146652630-146652489) | |
| 1-118, gnl|rn3|chr1 (146652629-146652502) | |
| 1-118, gnl|tetNig1|chr3 (107662-107799) | |
| 1-118, gnl|tetNig1|chr3 (107662-107789) | |
| 1-118, gnl|xenTro1|scaffold_195 (1499981-1499832) | |
| 1-118, gnl|xenTro1|scaffold_195 (1499981-1499854) | |
| 216-382, gnl|bosTau2|chr29 (5319717-5319883) | |
| 216-382, gnl|Hg17|chr11 (85665662-85665828) | |
| 216-382, gnl|Mm7|chr7 (85904853-85904690) | |
| 457-791, gnl|bosTau2|chr29 (5320974-5321308) | |
| 457-791, gnl|Hg17|chr11 (85667089-85667429) | |
| 457-791, gnl|Mm7|chr7 (85903498-85903166) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| vin (0.332557) | |
| sme (0.305437) | |
| spc (0.226732) | |
| col (0.195008) | |
| sag (0.182715) | |
| mga (0.160205) | |
| isp (0.150376) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ret (0.128733) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| sme (0.305437) | |
| spc (0.226732) | |
| col (0.195008) | |
| sag (0.182715) | |
| mga (0.160205) | |
| isp (0.150376) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ret (0.128733) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) | |
| ldo (0.0970026) |