Non-Coding RNA Search

Ss1.1-Mixc-0030,f09.3

Sequence:


               
               CCCCCACGCCTGCCCAGCTCGGGTTCTCCCGTCACAGCAGCTCAGTCCTCCAAAGCTGCT
GGACCCCAGGGAGAGCTGACCACCGCCTGAGCAGCCGGCTCCACCCACCTCCACAATGCC
GCTCTCAGGGACCCCAGCCCCAAACAAGAAGAGGAAATCCAGCAAGCTGATCATGGAACT
CACTGGAGGTGGACAGGAGAGCTCAGGCCTGAACCTGGGCAAGAAGATCAGTGTCCCAAG
GGATGTGATGTTGGAGGAGTTGTCGCTGCTCACTAACCGGGGCTCTAAGATGTTCAAACT
ACGGCAAATGAGGGTGGAGAAGTTTATCTATGAAAATCACCCTGATGTCTTCTCTGACAG
CTCAATGGATCACTTCCAGAAGTTCCTTCCCACAGTGGGGGGACAGCTGGGTACAGCTGG
TCAGGGATTCTCCTACAGCAAGGGCAGCAGTGGAGGCCAGGCAGGGGGAAGCAGCTCTGC
CGGACAGTATGGATCTGGCCAGCAGCATCATCATCAGGGGTCTGGGTCTGGATCTGGGGG
TGCAGGTGGTCCTGGGAGCCAGACTGGCAGAGGAGGAGATGCTGGCACAACAGGGGTTGG
TGAGACAGGAACAGGAGATCAAGCAGGTGGAGAAGGAAAACATATCACTGTGTTTAAGAC
CTATATTTCCCCATGGGAGAAAGCCATGGGGGTTGACCCCCACCAAAAAGTGGAGCTTGG
CATTGATCTGCTGGCCTATGGGGCCAAAGCTGAACTCCCTCAGTATAAGTCCTTCAACAG
GACAGCAATGCCTTATGGTGGATATGAGAAAGCCTCTAAACGCATGACCTTCCAGATGCC
CAAGTTTGACCTGGGCCCCTTGCTGAGTGAACCCCTGGTCCTCTACAACCAGAACCTCTC
CAACAGGCCTTCTTTCAATCGAACCCCTATTCCCTGGCTGAGCTCCGGGGAGCCTGTAGA
CTACAACGTGGATATTGGCATCCCCTTGGATGGAGAAACAGAGGAGCTGTGAGGTGTTTC
CACCTCTCCTTTGCATCATGTTTCCCCTCTCTGGTTCCAATTTGGAGAGGGAATGCTGAG
TAGGATATCCCCACTGAAAATCCAGTATCCTTGTGGGAATGGAGGGGAAAAGGAGGGAGA
GATCTGCCTTTTCATCCTTCACTCCAAGTCCCCACTCCAAGCATCCTTTCTCACCAGCTC
AGAGCTTCCCTTCACTTGCTCTGTATGGAAACTGCTCTTTTATGAATTTGCTCTGCCACC
GGTAACAGCTAATAAATTTCAAGGAAATGACTCATTCTTTCTGTGATATCTGAGGGCAGA
CGAAAACTGGGGCTAACAATGCACAGAGACTAATTAAAGTCAAATACCATACATCCATTA
TACAGACTACATGACTAGACCTGAGCTCTGATTACTTCCATACCCACACCCACACCCACA
TCCACACCCACCAAACCACATTCATAGTTGTGTAAAAAGACATACTTATTCAATAGTACA
TAAGACAAATAATCACATACAAACATATGTGCTGGCCCATATGTGGGCAAATTAAGAAGC
TATTGTGTGCTATGTTTAGGAAACAGGTGTTGGAGTTCCTGTTGTGGCACAGTGGAATGA
ATCCAACTAGGAACCATGAGGTTGTGTGTTTGATCCCTGGCCTTGCTCAGTGGGTTAAGG
ATCTGGCGTTGCCGTGAGCTGTGGTGTAGGTCGCAGACTTGGCTTGATTGTGATGTTGCT
GTGGCTGTGGTGTAGGCCAGCTGCTGTAGCTCTGAATGGACTCCCTATCCTGGGAAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCACGCCTGCCCAGCTCGGGTTCTCCCGTCACAGCAGCTCAGTCCTCCAAAGCTGCT
GGACCCCAGGGAGAGCTGACCACCGCCTGAGCAGCCGGCTCCACCCACCTCCACAATGCC
GCTCTCAGGGACCCCAGCCCCAAACAAGAAGAGGAAATCCAGCAAGCTGATCATGGAACT
CACTGGAGGTGGACAGGAGAGCTCAGGCCTGAACCTGGGCAAGAAGATCAGTGTCCCAAG
GGATGTGATGTTGGAGGAGTTGTCGCTGCTCACTAACCGGGGCTCTAAGATGTTCAAACT
ACGGCAAATGAGGGTGGAGAAGTTTATCTATGAAAATCACCCTGATGTCTTCTCTGACAG
CTCAATGGATCACTTCCAGAAGTTCCTTCCCACAGTGGGGGGACAGCTGGGTACAGCTGG
TCAGGGATTCTCCTACAGCAAGGGCAGCAGTGGAGGCCAGGCAGGGGGAAGCAGCTCTGC
CGGACAGTATGGATCTGGCCAGCAGCATCATCATCAGGGGTCTGGGTCTGGATCTGGGGG
TGCAGGTGGTCCTGGGAGCCAGACTGGCAGAGGAGGAGATGCTGGCACAACAGGGGTTGG
TGAGACAGGAACAGGAGATCAAGCAGGTGGAGAAGGAAAACATATCACTGTGTTTAAGAC
CTATATTTCCCCATGGGAGAAAGCCATGGGGGTTGACCCCCACCAAAAAGTGGAGCTTGG
CATTGATCTGCTGGCCTATGGGGCCAAAGCTGAACTCCCTCAGTATAAGTCCTTCAACAG
GACAGCAATGCCTTATGGTGGATATGAGAAAGCCTCTAAACGCATGACCTTCCAGATGCC
CAAGTTTGACCTGGGCCCCTTGCTGAGTGAACCCCTGGTCCTCTACAACCAGAACCTCTC
CAACAGGCCTTCTTTCAATCGAACCCCTATTCCCTGGCTGAGCTCCGGGGAGCCTGTAGA
CTACAACGTGGATATTGGCATCCCCTTGGATGGAGAAACAGAGGAGCTGTGAGGTGTTTC
CACCTCTCCTTTGCATCATGTTTCCCCTCTCTGGTTCCAATTTGGAGAGGGAATGCTGAG
TAGGATATCCCCACTGAAAATCCAGTATCCTTGTGGGAATGGAGGGGAAAAGGAGGGAGA
GATCTGCCTTTTCATCCTTCACTCCAAGTCCCCACTCCAAGCATCCTTTCTCACCAGCTC
AGAGCTTCCCTTCACTTGCTCTGTATGGAAACTGCTCTTTTATGAATTTGCTCTGCCACC
GGTAACAGCTAATAAATTTCAAGGAAATGACTCATTCTTTCTGTGATATCTGAGGGCAGA
CGAAAACTGGGGCTAACAATGCACAGAGACTAATTAAAGTCAAATACCATACATCCATTA
TACAGACTACATGACTAGACCTGAGCTCTGATTACTTCCATACCCACACCCACACCCACA
TCCACACCCACCAAACCACATTCATAGTTGTGTAAAAAGACATACTTATTCAATAGTACA
TAAGACAAATAATCACATACAAACATATGTGCTGGCCCATATGTGGGCAAATTAAGAAGC
TATTGTGTGCTATGTTTAGGAAACAGGTGTTGGAGTTCCTGTTGTGGCACAGTGGAATGA
ATCCAACTAGGAACCATGAGGTTGTGTGTTTGATCCCTGGCCTTGCTCAGTGGGTTAAGG
ATCTGGCGTTGCCGTGAGCTGTGGTGTAGGTCGCAGACTTGGCTTGATTGTGATGTTGCT
GTGGCTGTGGTGTAGGCCAGCTGCTGTAGCTCTGAATGGACTCCCTATCCTGGGAAGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H1I7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H1I7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               938-1137, + strand, RNAz p=0.988831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               938-1137, + strand, RNAz p=0.988831

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_021245, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021245, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               179-381, gnl|bosTau2|chr28 (22864914-22864713)
               

               
               179-381, gnl|Hg17|chr10 (75067697-75067496)
               

               
               179-381, gnl|Mm7|chr14 (18310371-18310169)
               


               
               778-1605, gnl|bosTau2|chr28 (22860047-22859234)
               

               
               778-1605, gnl|Hg17|chr10 (75061928-75061117)
               

               
               778-1605, gnl|Mm7|chr14 (18306169-18305360)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-381, gnl|bosTau2|chr28 (22864914-22864713)
               

               
               179-381, gnl|Hg17|chr10 (75067697-75067496)
               

               
               179-381, gnl|Mm7|chr14 (18310371-18310169)
               


               
               778-1605, gnl|bosTau2|chr28 (22860047-22859234)
               

               
               778-1605, gnl|Hg17|chr10 (75061928-75061117)
               

               
               778-1605, gnl|Mm7|chr14 (18306169-18305360)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               mas (7.36067)
               

               
               nms (4.27716)
               

               
               ssp (2.43935)
               

               
               tbr (1.23343)
               

               
               ton (1.053)
               

               
               sme (0.91631)
               

               
               nep (0.551775)
               

               
               ldo (0.485013)
               

               
               ste (0.405625)
               

               
               isp (0.300752)
               

               
               ese (0.253004)
               

               
               pty (0.142714)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (7.36067)
               

               
               nms (4.27716)
               

               
               ssp (2.43935)
               

               
               tbr (1.23343)
               

               
               ton (1.053)
               

               
               sme (0.91631)
               

               
               nep (0.551775)
               

               
               ldo (0.485013)
               

               
               ste (0.405625)
               

               
               isp (0.300752)
               

               
               ese (0.253004)
               

               
               pty (0.142714)

	179-381, gnl\|bosTau2\|chr28 (22864914-22864713)
	179-381, gnl\|Hg17\|chr10 (75067697-75067496)
	179-381, gnl\|Mm7\|chr14 (18310371-18310169)

	778-1605, gnl\|bosTau2\|chr28 (22860047-22859234)
	778-1605, gnl\|Hg17\|chr10 (75061928-75061117)
	778-1605, gnl\|Mm7\|chr14 (18306169-18305360)

	mas (7.36067)
	nms (4.27716)
	ssp (2.43935)
	tbr (1.23343)
	ton (1.053)
	sme (0.91631)
	nep (0.551775)
	ldo (0.485013)
	ste (0.405625)
	isp (0.300752)
	ese (0.253004)
	pty (0.142714)