Non-Coding RNA Search

Ss1.1-Mixc-0030g04.5

Sequence:


               
               GCTGGAACTCCCAATGTCACCATCCAAGATAGGCCTCCCAAACCTGTCCCTGTTACTAAT
CGTGGGTATGACGCAGTGCTGGCCGAGGGGTCTTGATAGCCAAGCAGCGAAGTCCTTTGC
CAGGATCGCTGCCATTCTTAAAAAAATGTTTTATTTTGTTTTGTTTTTTCATTTTTCTAA
AAGCATCAGACTGCCTTTCAGCAGGGCTAATTCGTGCTAATTCCCCTTTATCCTTAACCC
TCTATCTGTGATGGTTTTGATTCCACCTGCAAGTTCATTCATTTCTCAATAAGTGGATGT
TGAGTGTTGGTAGATTACAAGCCATTTGATCTGCAGTTGCTCAAGGAGAGGTTAGACATG
CTGTAGAATCGTGAGTGTGAGGAAAGTTTGTCTTTTTTAGATTATAAAGCTGAGGAGGGA
ACACTGTCAATAGGATCTGAGGCTCTCTTTCTCTCTTGATCTGAGACATTTCTGAAAAGG
CGAGGAAGGGAGGAGGAGTGGCCAGGGTGGTGCTGATTGTCTGCCTGTGTTGTAAATTGC
CTGCCCATACAAAGGGCTGCATTGTTCCAGTTTGCTTACTGGGCAGGGCTGCCAGCCTGC
TTGAAAGAGTAATGGAGAAAAGTTGAGCGGAAAGTAATCTCTACCTATAAAAGGCTTCCT
CTCCTCCCAGAGGAAAGCCCCAGTAAAGATAGATGGTCCAAGGACCCTACACGGGAACCC
CACCCCTGTGACTTTGTGATTTCCCGTTTCTACTGACATAGAAAGCTTTCTTTTCTGTGC
GTCTAAACTCTCCCTTCTGGCCAGAGCAGAAAACCTAGACCCGCAGGGTGAAATTATATA
AGAACTCCAGCAAAAATGAACTGCCTGGCACCCCCACATCTGTAGGTGTATGTTGATGGA
CATTTCTCGCCTCTCTAAAAGATGTTTGTAATAAAGAGACAAAGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGAACTCCCAATGTCACCATCCAAGATAGGCCTCCCAAACCTGTCCCTGTTACTAAT
CGTGGGTATGACGCAGTGCTGGCCGAGGGGTCTTGATAGCCAAGCAGCGAAGTCCTTTGC
CAGGATCGCTGCCATTCTTAAAAAAATGTTTTATTTTGTTTTGTTTTTTCATTTTTCTAA
AAGCATCAGACTGCCTTTCAGCAGGGCTAATTCGTGCTAATTCCCCTTTATCCTTAACCC
TCTATCTGTGATGGTTTTGATTCCACCTGCAAGTTCATTCATTTCTCAATAAGTGGATGT
TGAGTGTTGGTAGATTACAAGCCATTTGATCTGCAGTTGCTCAAGGAGAGGTTAGACATG
CTGTAGAATCGTGAGTGTGAGGAAAGTTTGTCTTTTTTAGATTATAAAGCTGAGGAGGGA
ACACTGTCAATAGGATCTGAGGCTCTCTTTCTCTCTTGATCTGAGACATTTCTGAAAAGG
CGAGGAAGGGAGGAGGAGTGGCCAGGGTGGTGCTGATTGTCTGCCTGTGTTGTAAATTGC
CTGCCCATACAAAGGGCTGCATTGTTCCAGTTTGCTTACTGGGCAGGGCTGCCAGCCTGC
TTGAAAGAGTAATGGAGAAAAGTTGAGCGGAAAGTAATCTCTACCTATAAAAGGCTTCCT
CTCCTCCCAGAGGAAAGCCCCAGTAAAGATAGATGGTCCAAGGACCCTACACGGGAACCC
CACCCCTGTGACTTTGTGATTTCCCGTTTCTACTGACATAGAAAGCTTTCTTTTCTGTGC
GTCTAAACTCTCCCTTCTGGCCAGAGCAGAAAACCTAGACCCGCAGGGTGAAATTATATA
AGAACTCCAGCAAAAATGAACTGCCTGGCACCCCCACATCTGTAGGTGTATGTTGATGGA
CATTTCTCGCCTCTCTAAAAGATGTTTGTAATAAAGAGACAAAGCTGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               159-947, gnl|bosTau2|chr6 (37112507-37111714)
               

               
               159-947, gnl|Hg17|chr4 (53580894-53580081)
               

               
               159-947, gnl|Mm7|chr5 (73624803-73623881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-947, gnl|bosTau2|chr6 (37112507-37111714)
               

               
               159-947, gnl|Hg17|chr4 (53580894-53580081)
               

               
               159-947, gnl|Mm7|chr5 (73624803-73623881)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ebs (0.118301)

	159-947, gnl\|bosTau2\|chr6 (37112507-37111714)
	159-947, gnl\|Hg17\|chr4 (53580894-53580081)
	159-947, gnl\|Mm7\|chr5 (73624803-73623881)