Ss1.1-Mixc-0030g17.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TGGATGACTTAGACTTCAATCTGAAAATTGTCCTCGTCAGTTTCAAGCAGTGTCTCAACG AGAAGGAAGAGGTGCTCTTGGACCACTACCTTGCCGGCTGGAGGGGCCTGGTCAGGTTCC TGAATAGCCTGGGCACCGTGTTCTCCTTCATCTCCAAGGACGTGGTGGCGAAGCTGCAGA TCATGGAGAAGCTATGCAGCGGTGCCCAGCGGGAGCACTACAGCAGCCTGCAGTCCATGG TGGCCTACGAGGTAGGCAACCAGCTGGTGGACCTGGAGCGGCGCTCCCGCCACCCCGACT CAGGCTGCCGGACCGTGCTTCGGCTGCACCGGGCCCTGCACTGGCTGCAGCTCTTCCTGG AAGGCCTCCGCGCCAGCCCCGAGGACGCGCGCACTGCCACACTCTGCACGGATTCCTACA ATGCCTCCCTGGCCGCCTATCACCCCTGGATCGTCCGTCGCGCTGTCACCGTGGCCTTCT GTGTGCTGCCCACACGGAAGGCCTTCCTGGAGGCCATGAACGTGGGGTCCCCTGAGCAGG CCGTGGAGATGCTGGGCGAGGCCCTGCCCTTCATCGAGCGTGTGTACAGCATCTCCCAGA ATCTCTACGCCGAGCACGCCCTGCTGGACCTGCCCTAGGGGCTGGGAGCCCTGCAGGGTG GGCGTGCCCTAACCCAGAGCTGTGTGGGGGTGGCCAGAACCCAGCAGTCCCGCCATGGAA ATTTCTGGGTCCTCCTGCGAACTCGAGCTGGTCCAGAGCCCCTCAGACCCTGCCTCTGGC CGAGGTGCTGGCCGCCTGTGCCTCACCCGGCCCCTCCCCCACCGGGCGTCTCATCTTTAC CCTCCGCCACGGTGCCCGCATGTCCAGTCAAGTCACCCTTGGTGGGTGAAGTGCAGAAGG CAGGGGAGCGTTCATGGACAAGCTGCCCCTCCCTGGGGATCGAGTGTGAGATGGAGGCGA CATCACCAGGCCCAGGATACAGCATCCGTCCAGAGGACGGGCGCCTCCGTACAGCTGGCT GTCCCCTGGACGGAGTACCCCTGGACAGCAGTCAGCACCTCAGGCTTCCCCCTGCCCCGC CTCCTCAGTTAGGGGCCCACATGCCCGTGGCTCTGACCATGGCACCTGGAGCCCTGAGGG GAGGCCTGCCCTGCCTCCACAGCCCTGTGCACGTCGGCTGCCTCCTGCAGCCTCGAGTCT GCACAGCACCACCCGAGAGCCCCCAGAAGCCCAGCACTCTGCTGGGCCAGGCTTGGCCTC TCCCTCCCCAGTGTCCAGCGAGGTGCTGTGTTCCCTTCGTCCCTGACCCTTGCTGCTCTG TCCCCATAGAGCTCAGGAGACCCAGAATGATTTCTTACAAGGGAAGGGGCCTGGACCGCT TTGCCTCTGTGCCAGGCTGCCACGTGGCTGCACCTGTCCGCCATCACTCAGGGCTTAGGC GCCTGTCCTGTCCCGCTGCCTCTTCCGTGTGAGTCCAGGCCCCTGGGTGCCAAGGGGACA GCACCCAGCCTGAGCAGATGTATGTAAGTGCGAGCCTTCAGGGCCCTTTAGAAGCTGTAA TACGAGTGATGGCTTTTTCCAAAATAAACTCCACTTACAGAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TGGATGACTTAGACTTCAATCTGAAAATTGTCCTCGTCAGTTTCAAGCAGTGTCTCAACG AGAAGGAAGAGGTGCTCTTGGACCACTACCTTGCCGGCTGGAGGGGCCTGGTCAGGTTCC TGAATAGCCTGGGCACCGTGTTCTCCTTCATCTCCAAGGACGTGGTGGCGAAGCTGCAGA TCATGGAGAAGCTATGCAGCGGTGCCCAGCGGGAGCACTACAGCAGCCTGCAGTCCATGG TGGCCTACGAGGTAGGCAACCAGCTGGTGGACCTGGAGCGGCGCTCCCGCCACCCCGACT CAGGCTGCCGGACCGTGCTTCGGCTGCACCGGGCCCTGCACTGGCTGCAGCTCTTCCTGG AAGGCCTCCGCGCCAGCCCCGAGGACGCGCGCACTGCCACACTCTGCACGGATTCCTACA ATGCCTCCCTGGCCGCCTATCACCCCTGGATCGTCCGTCGCGCTGTCACCGTGGCCTTCT GTGTGCTGCCCACACGGAAGGCCTTCCTGGAGGCCATGAACGTGGGGTCCCCTGAGCAGG CCGTGGAGATGCTGGGCGAGGCCCTGCCCTTCATCGAGCGTGTGTACAGCATCTCCCAGA ATCTCTACGCCGAGCACGCCCTGCTGGACCTGCCCTAGGGGCTGGGAGCCCTGCAGGGTG GGCGTGCCCTAACCCAGAGCTGTGTGGGGGTGGCCAGAACCCAGCAGTCCCGCCATGGAA ATTTCTGGGTCCTCCTGCGAACTCGAGCTGGTCCAGAGCCCCTCAGACCCTGCCTCTGGC CGAGGTGCTGGCCGCCTGTGCCTCACCCGGCCCCTCCCCCACCGGGCGTCTCATCTTTAC CCTCCGCCACGGTGCCCGCATGTCCAGTCAAGTCACCCTTGGTGGGTGAAGTGCAGAAGG CAGGGGAGCGTTCATGGACAAGCTGCCCCTCCCTGGGGATCGAGTGTGAGATGGAGGCGA CATCACCAGGCCCAGGATACAGCATCCGTCCAGAGGACGGGCGCCTCCGTACAGCTGGCT GTCCCCTGGACGGAGTACCCCTGGACAGCAGTCAGCACCTCAGGCTTCCCCCTGCCCCGC CTCCTCAGTTAGGGGCCCACATGCCCGTGGCTCTGACCATGGCACCTGGAGCCCTGAGGG GAGGCCTGCCCTGCCTCCACAGCCCTGTGCACGTCGGCTGCCTCCTGCAGCCTCGAGTCT GCACAGCACCACCCGAGAGCCCCCAGAAGCCCAGCACTCTGCTGGGCCAGGCTTGGCCTC TCCCTCCCCAGTGTCCAGCGAGGTGCTGTGTTCCCTTCGTCCCTGACCCTTGCTGCTCTG TCCCCATAGAGCTCAGGAGACCCAGAATGATTTCTTACAAGGGAAGGGGCCTGGACCGCT TTGCCTCTGTGCCAGGCTGCCACGTGGCTGCACCTGTCCGCCATCACTCAGGGCTTAGGC GCCTGTCCTGTCCCGCTGCCTCTTCCGTGTGAGTCCAGGCCCCTGGGTGCCAAGGGGACA GCACCCAGCCTGAGCAGATGTATGTAAGTGCGAGCCTTCAGGGCCCTTTAGAAGCTGTAA TACGAGTGATGGCTTTTTCCAAAATAAACTCCACTTACAGAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 36 entry(ies) | More info |
Aligned organism(s): 36 entry(ies) | Help | Less info |
113-767, gnl|bosTau2|chr16 (37917543-37916889) | |
113-767, gnl|canFam2|chr5 (59501312-59501858) | |
113-767, gnl|canFam2|chr5 (34779951-34779522) | |
113-767, gnl|danRer3|chr6 (19770739-19770212) | |
113-767, gnl|danRer3|chr6 (19770741-19770338) | |
113-767, gnl|dasNov1|scaffold_8019 (11092-11652) | |
113-767, gnl|dasNov1|scaffold_8019 (11067-11507) | |
113-767, gnl|echTel1|scaffold_298652 (1079-1494) | |
113-767, gnl|echTel1|scaffold_307262 (3017-2474) | |
113-767, gnl|fr1|chrUn (232478662-232478133) | |
113-767, gnl|fr1|chrUn (232478663-232478261) | |
113-767, gnl|galGal2|chr21 (2237184-2236627) | |
113-767, gnl|galGal2|chr21 (2237188-2236783) | |
113-767, gnl|hg17|chr1 (1302540-1303083) | |
113-767, gnl|Hg17|chr1 (1302541-1303217) | |
113-767, gnl|hg17|chr17 (4639786-4640203) | |
113-767, gnl|loxAfr1|scaffold_40882 (17329-17767) | |
113-767, gnl|mm7|chr11 (70601535-70601954) | |
113-767, gnl|mm7|chr4 (154856433-154855900) | |
113-767, gnl|Mm7|chr4 (154856430-154855785) | |
113-767, gnl|monDom2|scaffold_196 (43980-44520) | |
113-767, gnl|monDom2|scaffold_66 (3580279-3579904) | |
113-767, gnl|oryCun1|scaffold_193919 (263-789) | |
113-767, gnl|oryCun1|scaffold_193919 (256-663) | |
113-767, gnl|panTro1|chr1 (1191708-1192251) | |
113-767, gnl|panTro1|chr19 (4942839-4943256) | |
113-767, gnl|rheMac2|chr1 (4395781-4396324) | |
113-767, gnl|rheMac2|chr16 (4579787-4580200) | |
113-767, gnl|rn3|chr10 (57378241-57378660) | |
113-767, gnl|rn3|chr5 (172735976-172735429) | |
113-767, gnl|tetNig1|chr9 (10276581-10276051) | |
113-767, gnl|tetNig1|chr9 (10276582-10276179) | |
113-767, gnl|xenTro1|scaffold_414 (445248-444704) | |
113-767, gnl|xenTro1|scaffold_499 (581964-581556) | |
788-1602, gnl|bosTau2|chr16 (37916843-37915997) | |
788-1602, gnl|Hg17|chr1 (1303233-1304181) |
Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
113-767, gnl|bosTau2|chr16 (37917543-37916889) | |
113-767, gnl|canFam2|chr5 (59501312-59501858) | |
113-767, gnl|canFam2|chr5 (34779951-34779522) | |
113-767, gnl|danRer3|chr6 (19770739-19770212) | |
113-767, gnl|danRer3|chr6 (19770741-19770338) | |
113-767, gnl|dasNov1|scaffold_8019 (11092-11652) | |
113-767, gnl|dasNov1|scaffold_8019 (11067-11507) | |
113-767, gnl|echTel1|scaffold_298652 (1079-1494) | |
113-767, gnl|echTel1|scaffold_307262 (3017-2474) | |
113-767, gnl|fr1|chrUn (232478662-232478133) | |
113-767, gnl|fr1|chrUn (232478663-232478261) | |
113-767, gnl|galGal2|chr21 (2237184-2236627) | |
113-767, gnl|galGal2|chr21 (2237188-2236783) | |
113-767, gnl|hg17|chr1 (1302540-1303083) | |
113-767, gnl|Hg17|chr1 (1302541-1303217) | |
113-767, gnl|hg17|chr17 (4639786-4640203) | |
113-767, gnl|loxAfr1|scaffold_40882 (17329-17767) | |
113-767, gnl|mm7|chr11 (70601535-70601954) | |
113-767, gnl|mm7|chr4 (154856433-154855900) | |
113-767, gnl|Mm7|chr4 (154856430-154855785) | |
113-767, gnl|monDom2|scaffold_196 (43980-44520) | |
113-767, gnl|monDom2|scaffold_66 (3580279-3579904) | |
113-767, gnl|oryCun1|scaffold_193919 (263-789) | |
113-767, gnl|oryCun1|scaffold_193919 (256-663) | |
113-767, gnl|panTro1|chr1 (1191708-1192251) | |
113-767, gnl|panTro1|chr19 (4942839-4943256) | |
113-767, gnl|rheMac2|chr1 (4395781-4396324) | |
113-767, gnl|rheMac2|chr16 (4579787-4580200) | |
113-767, gnl|rn3|chr10 (57378241-57378660) | |
113-767, gnl|rn3|chr5 (172735976-172735429) | |
113-767, gnl|tetNig1|chr9 (10276581-10276051) | |
113-767, gnl|tetNig1|chr9 (10276582-10276179) | |
113-767, gnl|xenTro1|scaffold_414 (445248-444704) | |
113-767, gnl|xenTro1|scaffold_499 (581964-581556) | |
788-1602, gnl|bosTau2|chr16 (37916843-37915997) | |
788-1602, gnl|Hg17|chr1 (1303233-1304181) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cly (0.241284) | |
hyp (0.142837) | |
jca (0.11396) |