Non-Coding RNA Search

Ss1.1-Mixc-0030h24.5

Sequence:


               
               TGGAGTGGCGCTAGCGTTCGAAGAGTGTATTAACCAGACTTGTGATGTGTAGGTGCTTGA
AGAAAAACATACCAGATTAGTCTTTAAAAGAAAAAGATTCCCAGTTGTCCTTGTCCTTAC
CTGCTGGGTGGTGCGGGGTTCCTGCTTTTCTGCCACACCGTGACGCTGAAGGTTGGGGTG
GAGGTGAGGGGACAGATGGGGGGCTGCCCCCTGGACCTGCCTGCAGGCTGAGGCTTCTGT
GCCGAGCGAGCGAGCGGCGCAGGGACAGCAGCCTCAGGTCCCACAGCTGCCAGGGAGGGA
GGGAGGGAGCTCTGCGGCCCAAGCAGGGGAGGCCGGGAGCTGCCCACTGGGGCTCTGCCT
CTGCAGTAGCCGCAGCAACAGGCACAGACCGCCTTGAGTTGCCCGGGCTGCGCCGCGATA
GAAATCACGGAGACCCCGAGGGATCAGGAGCTGGTCCCTTTAGGTAACTGAAAAATATCA
GGGTCTCCGTGTTCAAAGGCAGGCTGGAGAGTGGAGCAACCGCAGTGGGGTTACCGGGCC
CAGACCCGGACCACAGCCAGGCCGCACCCTAGGGTACCCAAGCGTGTCCGCGCCCAAACC
CCGCCAGCCCCACTCCCCTCCTGCTCCCCAGCGCCTCCCACCCTCCCCGACTCCCTCCTG
CCTTTCGGAGTTCTGTTCACTCAGAATTGTAAATGTTAGTTGTGACCATGACATATTGTT
TGGGTCAATGTTCCTTTCCAATGCATACTAATATATTACAGTTATTATATATGAATATAT
TTAATGACATGAAAAAGTTGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGTGGCGCTAGCGTTCGAAGAGTGTATTAACCAGACTTGTGATGTGTAGGTGCTTGA
AGAAAAACATACCAGATTAGTCTTTAAAAGAAAAAGATTCCCAGTTGTCCTTGTCCTTAC
CTGCTGGGTGGTGCGGGGTTCCTGCTTTTCTGCCACACCGTGACGCTGAAGGTTGGGGTG
GAGGTGAGGGGACAGATGGGGGGCTGCCCCCTGGACCTGCCTGCAGGCTGAGGCTTCTGT
GCCGAGCGAGCGAGCGGCGCAGGGACAGCAGCCTCAGGTCCCACAGCTGCCAGGGAGGGA
GGGAGGGAGCTCTGCGGCCCAAGCAGGGGAGGCCGGGAGCTGCCCACTGGGGCTCTGCCT
CTGCAGTAGCCGCAGCAACAGGCACAGACCGCCTTGAGTTGCCCGGGCTGCGCCGCGATA
GAAATCACGGAGACCCCGAGGGATCAGGAGCTGGTCCCTTTAGGTAACTGAAAAATATCA
GGGTCTCCGTGTTCAAAGGCAGGCTGGAGAGTGGAGCAACCGCAGTGGGGTTACCGGGCC
CAGACCCGGACCACAGCCAGGCCGCACCCTAGGGTACCCAAGCGTGTCCGCGCCCAAACC
CCGCCAGCCCCACTCCCCTCCTGCTCCCCAGCGCCTCCCACCCTCCCCGACTCCCTCCTG
CCTTTCGGAGTTCTGTTCACTCAGAATTGTAAATGTTAGTTGTGACCATGACATATTGTT
TGGGTCAATGTTCCTTTCCAATGCATACTAATATATTACAGTTATTATATATGAATATAT
TTAATGACATGAAAAAGTTGTGGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               419-519, - strand, RNAz p=0.753456
               

               
               688-804, - strand, RNAz p=0.91633

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               419-519, - strand, RNAz p=0.753456
               

               
               688-804, - strand, RNAz p=0.91633

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-804, gnl|bosTau2|chr19 (21463012-21463857)
               

               
               6-804, gnl|Hg17|chr17 (9086972-9087907)
               

               
               6-804, gnl|Mm7|chr11 (68291970-68291083)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-804, gnl|bosTau2|chr19 (21463012-21463857)
               

               
               6-804, gnl|Hg17|chr17 (9086972-9087907)
               

               
               6-804, gnl|Mm7|chr11 (68291970-68291083)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ecc (0.23007)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	419-519, - strand, RNAz p=0.753456
	688-804, - strand, RNAz p=0.91633

	6-804, gnl\|bosTau2\|chr19 (21463012-21463857)
	6-804, gnl\|Hg17\|chr17 (9086972-9087907)
	6-804, gnl\|Mm7\|chr11 (68291970-68291083)