Non-Coding RNA Search

Ss1.1-Mixc-0030i18.3

Sequence:


               
               TTTTTTTTTTCCTAAAAGAAATGTCAGATCTTGATCCTTTTTCTCACCTGCAGGGTATTC
GCAGGACAGAATCCTAAAGAACCTTCAAACCTATATAATGTTCTCAATGCTTAGTTTTCT
CATGAAGCTGATTTAAGTGAGCTACCAATTTATATAAGCAGGAGGAGCAAATTACTACTA
AGACTAGGGCAAGCACGAGGAGCCTGATCTTTAGAAGGTATCCAGATGAAAAAAATGGAG
ACTCCGCCCAGCCCTTAACTTTCTCGGCTTTTCTAGTCCTGATTTTCTTTTCCAGAAAAG
CACAACTTCCTTCTTACTGCCTGCTTCCATCTGAGGCCTGGGGCAAAAAGACCGCTATTT
ATCCAAGTACCTTCTTAAGGCATTCTTAAAGCTCAAGCTTGCTCAGAAACAGCGAAAAAG
ATTTGCTTTCTTGGGTTAAAGGAGGGCATTTACAAGGTTTGGAGGCCGGGTTTGTCAGGA
AGCGTAAGGCCGAGAAAGAGGGAGAATCCAGAGACTGAGCTGCATCTGGTCCCAGGAACC
ACCCCCAAGGGGCGGCTAGACTGCCCTCGGTACTTCCCTGCCGCCTCGGCTCGGGTGGGG
AAAGCGGTGGGTCGGGGTCAGGCTCCCCTGAGCTACTTCCTGGTCGGATCAGACTCGCCT
TCGGACACCCGAAACGCCCCCGGCCCGGCTCCCTCGCCCTTTGCCCTGTCTCCTCCCATC
TCTGTGACCCACCGCCACCGGTCCCCTCCCATCTAACATGGCCGCACCCACCCGGCCCAC
CCCCGGCACAGCCTAACAAATTGGGGAGCCCGCAGCACCGCCTCCCCCATGCCCATTGGT
GCGGCCGCCTCCGTCCGCATGCCCGATTGGATAGCACGTGCTGCCACTCGGCGCCGAAAG
CTCCGCACTCCAAGCCGCTTCAAGCTGCTTTGAGAAGACATATAAACAAATCCCGGGAGG
GAGGCCCCTCTAGCGCGTCGCCGGGGCGGGGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTCCTAAAAGAAATGTCAGATCTTGATCCTTTTTCTCACCTGCAGGGTATTC
GCAGGACAGAATCCTAAAGAACCTTCAAACCTATATAATGTTCTCAATGCTTAGTTTTCT
CATGAAGCTGATTTAAGTGAGCTACCAATTTATATAAGCAGGAGGAGCAAATTACTACTA
AGACTAGGGCAAGCACGAGGAGCCTGATCTTTAGAAGGTATCCAGATGAAAAAAATGGAG
ACTCCGCCCAGCCCTTAACTTTCTCGGCTTTTCTAGTCCTGATTTTCTTTTCCAGAAAAG
CACAACTTCCTTCTTACTGCCTGCTTCCATCTGAGGCCTGGGGCAAAAAGACCGCTATTT
ATCCAAGTACCTTCTTAAGGCATTCTTAAAGCTCAAGCTTGCTCAGAAACAGCGAAAAAG
ATTTGCTTTCTTGGGTTAAAGGAGGGCATTTACAAGGTTTGGAGGCCGGGTTTGTCAGGA
AGCGTAAGGCCGAGAAAGAGGGAGAATCCAGAGACTGAGCTGCATCTGGTCCCAGGAACC
ACCCCCAAGGGGCGGCTAGACTGCCCTCGGTACTTCCCTGCCGCCTCGGCTCGGGTGGGG
AAAGCGGTGGGTCGGGGTCAGGCTCCCCTGAGCTACTTCCTGGTCGGATCAGACTCGCCT
TCGGACACCCGAAACGCCCCCGGCCCGGCTCCCTCGCCCTTTGCCCTGTCTCCTCCCATC
TCTGTGACCCACCGCCACCGGTCCCCTCCCATCTAACATGGCCGCACCCACCCGGCCCAC
CCCCGGCACAGCCTAACAAATTGGGGAGCCCGCAGCACCGCCTCCCCCATGCCCATTGGT
GCGGCCGCCTCCGTCCGCATGCCCGATTGGATAGCACGTGCTGCCACTCGGCGCCGAAAG
CTCCGCACTCCAAGCCGCTTCAAGCTGCTTTGAGAAGACATATAAACAAATCCCGGGAGG
GAGGCCCCTCTAGCGCGTCGCCGGGGCGGGGAAGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               541-654, - strand, RNAz p=0.654608
               

               
               773-880, - strand, RNAz p=0.793796

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               541-654, - strand, RNAz p=0.654608
               

               
               773-880, - strand, RNAz p=0.793796

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-996, gnl|bosTau2|chr3 (61294510-61295525)
               

               
               1-996, gnl|canFam2|chr4 (42556775-42555996)
               

               
               1-996, gnl|dasNov1|scaffold_945 (75689-74911)
               

               
               1-996, gnl|echTel1|scaffold_322705 (2847-3607)
               

               
               1-996, gnl|hg17|chr5 (172416640-172417416)
               

               
               1-996, gnl|Hg17|chr5 (172417669-172416668)
               

               
               1-996, gnl|loxAfr1|scaffold_484 (243052-242275)
               

               
               1-996, gnl|mm7|chr17 (24900708-24901506)
               

               
               1-996, gnl|Mm7|chr17 (24901764-24900733)
               

               
               1-996, gnl|monDom2|scaffold_6 (27463553-27462748)
               

               
               1-996, gnl|oryCun1|scaffold_160828 (949-164)
               

               
               1-996, gnl|panTro1|chr4 (179794669-179795458)
               

               
               1-996, gnl|rheMac2|chr6 (169453961-169454753)
               

               
               1-996, gnl|rn3|chr10 (16724397-16723629)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-996, gnl|bosTau2|chr3 (61294510-61295525)
               

               
               1-996, gnl|canFam2|chr4 (42556775-42555996)
               

               
               1-996, gnl|dasNov1|scaffold_945 (75689-74911)
               

               
               1-996, gnl|echTel1|scaffold_322705 (2847-3607)
               

               
               1-996, gnl|hg17|chr5 (172416640-172417416)
               

               
               1-996, gnl|Hg17|chr5 (172417669-172416668)
               

               
               1-996, gnl|loxAfr1|scaffold_484 (243052-242275)
               

               
               1-996, gnl|mm7|chr17 (24900708-24901506)
               

               
               1-996, gnl|Mm7|chr17 (24901764-24900733)
               

               
               1-996, gnl|monDom2|scaffold_6 (27463553-27462748)
               

               
               1-996, gnl|oryCun1|scaffold_160828 (949-164)
               

               
               1-996, gnl|panTro1|chr4 (179794669-179795458)
               

               
               1-996, gnl|rheMac2|chr6 (169453961-169454753)
               

               
               1-996, gnl|rn3|chr10 (16724397-16723629)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eep (0.245128)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)

	541-654, - strand, RNAz p=0.654608
	773-880, - strand, RNAz p=0.793796

	1-996, gnl\|bosTau2\|chr3 (61294510-61295525)
	1-996, gnl\|canFam2\|chr4 (42556775-42555996)
	1-996, gnl\|dasNov1\|scaffold_945 (75689-74911)
	1-996, gnl\|echTel1\|scaffold_322705 (2847-3607)
	1-996, gnl\|hg17\|chr5 (172416640-172417416)
	1-996, gnl\|Hg17\|chr5 (172417669-172416668)
	1-996, gnl\|loxAfr1\|scaffold_484 (243052-242275)
	1-996, gnl\|mm7\|chr17 (24900708-24901506)
	1-996, gnl\|Mm7\|chr17 (24901764-24900733)
	1-996, gnl\|monDom2\|scaffold_6 (27463553-27462748)
	1-996, gnl\|oryCun1\|scaffold_160828 (949-164)
	1-996, gnl\|panTro1\|chr4 (179794669-179795458)
	1-996, gnl\|rheMac2\|chr6 (169453961-169454753)
	1-996, gnl\|rn3\|chr10 (16724397-16723629)