Non-Coding RNA Search

Ss1.1-Mixc-0030l18.3

Sequence:


               
               TGAGAACCTCAGCCTCAAAAATGGCTCTGGTTTTGGGAAGAAAAGCAAAGACATGTCCAC
CGAGCGGGACTTCTTCATGAGGATGAAGTGCACCGTCACCAACAGAGGCCGCACCGTCAA
CCTCAAGTCAGCCACCTGGAAGGTCCTGCACTGCACGGGCCAGGTGAAGGTCTACAACAA
CTGCCCCCCTCACAGCAGTCTCTGCGGCTGCAAGGAGCCGCTGCTGTCCTGCCTCATCAT
CATGTGCGAGCCCATCCAGCACCCGTCCCACATGGACATCCCCCTGGACAGCAAGACCTT
CCTGAGCCGCCACAGCATGGACATGAAGTTCACCTACTGCGACGACAGAATCACAGAACT
GATTGGTTACCACCCCGAGGAGCTGCTCGGCCGCTCAGCATATGAGTTCTACCATGCCCT
GGACTCGGAGAACATGACCAAAAGTCACCAGAACTTGTGCACCAAAGGGCAGGTGGTCAG
CGGCCAGTACCGGATGCTTGCGAAGCACGGGGGCTACGTGTGGCTGGAGACGCAGGGGAC
GGTCATCTACAACCCCCGCAACCTGCAGCCTCAGTGCATCATGTGTGTCAACTACGTCCT
GAGTGAGATTGAGAAGAACGACGTGGTATTCTCCATGGACCAGACAGAGTCCCCGTTCAA
GCCGCACCTGATGGCCATGAATAGCATCTTTGACAACAGTGGCAAGGTGCCTGTGTCGGA
GAAGAGCAACTTCCTGTTCACCAAGCTAAGGAGGAACCCGAGGAGCTGGCCCAGCTGGCC
CCCACCGCGGGAGACACCATCATTTCTCTGGATTTCGGAAACCCGACCTTCGAGGAGTCC
TCAGCCTATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGAACCTCAGCCTCAAAAATGGCTCTGGTTTTGGGAAGAAAAGCAAAGACATGTCCAC
CGAGCGGGACTTCTTCATGAGGATGAAGTGCACCGTCACCAACAGAGGCCGCACCGTCAA
CCTCAAGTCAGCCACCTGGAAGGTCCTGCACTGCACGGGCCAGGTGAAGGTCTACAACAA
CTGCCCCCCTCACAGCAGTCTCTGCGGCTGCAAGGAGCCGCTGCTGTCCTGCCTCATCAT
CATGTGCGAGCCCATCCAGCACCCGTCCCACATGGACATCCCCCTGGACAGCAAGACCTT
CCTGAGCCGCCACAGCATGGACATGAAGTTCACCTACTGCGACGACAGAATCACAGAACT
GATTGGTTACCACCCCGAGGAGCTGCTCGGCCGCTCAGCATATGAGTTCTACCATGCCCT
GGACTCGGAGAACATGACCAAAAGTCACCAGAACTTGTGCACCAAAGGGCAGGTGGTCAG
CGGCCAGTACCGGATGCTTGCGAAGCACGGGGGCTACGTGTGGCTGGAGACGCAGGGGAC
GGTCATCTACAACCCCCGCAACCTGCAGCCTCAGTGCATCATGTGTGTCAACTACGTCCT
GAGTGAGATTGAGAAGAACGACGTGGTATTCTCCATGGACCAGACAGAGTCCCCGTTCAA
GCCGCACCTGATGGCCATGAATAGCATCTTTGACAACAGTGGCAAGGTGCCTGTGTCGGA
GAAGAGCAACTTCCTGTTCACCAAGCTAAGGAGGAACCCGAGGAGCTGGCCCAGCTGGCC
CCCACCGCGGGAGACACCATCATTTCTCTGGATTTCGGAAACCCGACCTTCGAGGAGTCC
TCAGCCTATGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               180-299, - strand, RNAz p=0.945723

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-299, - strand, RNAz p=0.945723

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               198-322, + strand, RNAmicro p=0.98441

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               198-322, + strand, RNAmicro p=0.98441

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               141-348, gnl|bosTau2|chr11 (23309685-23309478)
               

               
               141-348, gnl|Hg17|chr2 (46499673-46499880)
               

               
               141-348, gnl|Mm7|chr17 (85112024-85112231)
               


               
               456-614, gnl|bosTau2|chr11 (23293209-23293050)
               

               
               456-614, gnl|canFam2|chr10 (51752167-51752342)
               

               
               456-614, gnl|danRer3|chr12 (22294270-22294435)
               

               
               456-614, gnl|dasNov1|scaffold_15916 (266-443)
               

               
               456-614, gnl|echTel1|scaffold_316354 (41017-40837)
               

               
               456-614, gnl|fr1|chrUn (61606380-61606210)
               

               
               456-614, gnl|galGal2|chr3 (22948171-22948341)
               

               
               456-614, gnl|hg17|chr2 (46514462-46514637)
               

               
               456-614, gnl|Hg17|chr2 (46514480-46514639)
               

               
               456-614, gnl|loxAfr1|scaffold_65695 (1779-1954)
               

               
               456-614, gnl|mm7|chr17 (85126108-85126279)
               

               
               456-614, gnl|Mm7|chr17 (85126122-85126278)
               

               
               456-614, gnl|monDom2|scaffold_1 (6007052-6007242)
               

               
               456-614, gnl|oryCun1|scaffold_172732 (17540-17367)
               

               
               456-614, gnl|panTro1|chr12 (48499192-48499367)
               

               
               456-614, gnl|rheMac2|chr13 (46493829-46494001)
               

               
               456-614, gnl|rn3|chr6 (10289661-10289833)
               

               
               456-614, gnl|tetNig1|chr17 (9074572-9074738)
               

               
               456-614, gnl|xenTro1|scaffold_462 (212833-213004)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-348, gnl|bosTau2|chr11 (23309685-23309478)
               

               
               141-348, gnl|Hg17|chr2 (46499673-46499880)
               

               
               141-348, gnl|Mm7|chr17 (85112024-85112231)
               


               
               456-614, gnl|bosTau2|chr11 (23293209-23293050)
               

               
               456-614, gnl|canFam2|chr10 (51752167-51752342)
               

               
               456-614, gnl|danRer3|chr12 (22294270-22294435)
               

               
               456-614, gnl|dasNov1|scaffold_15916 (266-443)
               

               
               456-614, gnl|echTel1|scaffold_316354 (41017-40837)
               

               
               456-614, gnl|fr1|chrUn (61606380-61606210)
               

               
               456-614, gnl|galGal2|chr3 (22948171-22948341)
               

               
               456-614, gnl|hg17|chr2 (46514462-46514637)
               

               
               456-614, gnl|Hg17|chr2 (46514480-46514639)
               

               
               456-614, gnl|loxAfr1|scaffold_65695 (1779-1954)
               

               
               456-614, gnl|mm7|chr17 (85126108-85126279)
               

               
               456-614, gnl|Mm7|chr17 (85126122-85126278)
               

               
               456-614, gnl|monDom2|scaffold_1 (6007052-6007242)
               

               
               456-614, gnl|oryCun1|scaffold_172732 (17540-17367)
               

               
               456-614, gnl|panTro1|chr12 (48499192-48499367)
               

               
               456-614, gnl|rheMac2|chr13 (46493829-46494001)
               

               
               456-614, gnl|rn3|chr6 (10289661-10289833)
               

               
               456-614, gnl|tetNig1|chr17 (9074572-9074738)
               

               
               456-614, gnl|xenTro1|scaffold_462 (212833-213004)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	141-348, gnl\|bosTau2\|chr11 (23309685-23309478)
	141-348, gnl\|Hg17\|chr2 (46499673-46499880)
	141-348, gnl\|Mm7\|chr17 (85112024-85112231)

	456-614, gnl\|bosTau2\|chr11 (23293209-23293050)
	456-614, gnl\|canFam2\|chr10 (51752167-51752342)
	456-614, gnl\|danRer3\|chr12 (22294270-22294435)
	456-614, gnl\|dasNov1\|scaffold_15916 (266-443)
	456-614, gnl\|echTel1\|scaffold_316354 (41017-40837)
	456-614, gnl\|fr1\|chrUn (61606380-61606210)
	456-614, gnl\|galGal2\|chr3 (22948171-22948341)
	456-614, gnl\|hg17\|chr2 (46514462-46514637)
	456-614, gnl\|Hg17\|chr2 (46514480-46514639)
	456-614, gnl\|loxAfr1\|scaffold_65695 (1779-1954)
	456-614, gnl\|mm7\|chr17 (85126108-85126279)
	456-614, gnl\|Mm7\|chr17 (85126122-85126278)
	456-614, gnl\|monDom2\|scaffold_1 (6007052-6007242)
	456-614, gnl\|oryCun1\|scaffold_172732 (17540-17367)
	456-614, gnl\|panTro1\|chr12 (48499192-48499367)
	456-614, gnl\|rheMac2\|chr13 (46493829-46494001)
	456-614, gnl\|rn3\|chr6 (10289661-10289833)
	456-614, gnl\|tetNig1\|chr17 (9074572-9074738)
	456-614, gnl\|xenTro1\|scaffold_462 (212833-213004)