Non-Coding RNA Search

Ss1.1-Mixc-0031,a15.3.5

Sequence:


               
               GGAACCTGAAGGTGCTGACAAAGATGACCTGCTGCTGCTGAGTGAAATCTTCAATGCATC
CTCCCTGGAAGAGGGCGAGTTCAGCCAAGAGTGGGCTGCTGTGTTTGGAGATGGTCGGCT
GAAGGAGGCAGCGCCTACTGTGGCCCCAGGAGAGCCAGACCCCAAGCCCCAGACAGGTTC
AGGATTCCTTCCTTCACAGCTTTTAGATCAAAATATGAAAGACTTACAGGCCTCACTGCA
AGGCTGGTCAGAGAGCAAGGTCAATCCTGCCCCTCCTCCATGGCCAGCACCACAGGCAAG
CAGTCCAAGTGGCAGCAGCCCCGCAGTAAAAGAGCCTGCCAAAGCCACCTCGGACCTGAC
TGCCTGGTTCAGCCTCTTTGCTGACCTCGACCCATTATCAAATCCTGATGCTGTTGGGAA
AACCGATAAAGAACACGAATTGCTCAATGCATGAGTCTACAGCCTCTGGGAGGGAGCCCA
CAAACTGCTCTGCATCAACACACCAGGGGGCTCATGGGCATAGGAGGTGATCAGTATGCT
GTTTTAATATTTACGTGCCATTTTAATAAAATGAAAGGGTCAAAGGCCCTGTTTATATTG
GTATAATTATTTACTCTTATTTGGTATAAAGGTTTTAGTGTATTCTCTACTGGACCTGAC
AAAACAGGATTGTCTAGGAGCGGTTTCCAGGCTGGCTGCTCTCCTGCCAACAACTGCATC
ATGGCTGCTGACGTGTCGCTGGGCTACTCTGAGGTCCAAGTTTAAATCTTAAACCTACTT
GTGTTAGGTTTAAAATAAGGTGTCCTATAGCCCCAGAGGCAGCAGAAGGCTAAGATGCCA
CCTCTTGTACACTCTGCCTCTATCCCCCCTGGCAGGGGGCAGGGAGACCCTCTCTTCCTG
CCAAGGCCCCTTTCAGCAGCTCTGGGTGAAGCTCCAGCCAACCAAAGACACTGTCCTGCA
GCCCTGCCAGTGTGGCTGCAGTTCCTCCTGGGGCAGAGGGCTAGGCTTGACTGCGCTGCA
CAAACCTTTCTGTGGAAAGCAGCCATATCTGCAGATCCCAGCTCTCCTCTGCTCCTCTCC
ATGGCTGGAATTCAGAGGCATGTATTTCTGGAGCCCCTTGTGACAGTAACTGTTTTTTGT
TTTGTTTTTTTAATTAAACAGAAAAGATATTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACCTGAAGGTGCTGACAAAGATGACCTGCTGCTGCTGAGTGAAATCTTCAATGCATC
CTCCCTGGAAGAGGGCGAGTTCAGCCAAGAGTGGGCTGCTGTGTTTGGAGATGGTCGGCT
GAAGGAGGCAGCGCCTACTGTGGCCCCAGGAGAGCCAGACCCCAAGCCCCAGACAGGTTC
AGGATTCCTTCCTTCACAGCTTTTAGATCAAAATATGAAAGACTTACAGGCCTCACTGCA
AGGCTGGTCAGAGAGCAAGGTCAATCCTGCCCCTCCTCCATGGCCAGCACCACAGGCAAG
CAGTCCAAGTGGCAGCAGCCCCGCAGTAAAAGAGCCTGCCAAAGCCACCTCGGACCTGAC
TGCCTGGTTCAGCCTCTTTGCTGACCTCGACCCATTATCAAATCCTGATGCTGTTGGGAA
AACCGATAAAGAACACGAATTGCTCAATGCATGAGTCTACAGCCTCTGGGAGGGAGCCCA
CAAACTGCTCTGCATCAACACACCAGGGGGCTCATGGGCATAGGAGGTGATCAGTATGCT
GTTTTAATATTTACGTGCCATTTTAATAAAATGAAAGGGTCAAAGGCCCTGTTTATATTG
GTATAATTATTTACTCTTATTTGGTATAAAGGTTTTAGTGTATTCTCTACTGGACCTGAC
AAAACAGGATTGTCTAGGAGCGGTTTCCAGGCTGGCTGCTCTCCTGCCAACAACTGCATC
ATGGCTGCTGACGTGTCGCTGGGCTACTCTGAGGTCCAAGTTTAAATCTTAAACCTACTT
GTGTTAGGTTTAAAATAAGGTGTCCTATAGCCCCAGAGGCAGCAGAAGGCTAAGATGCCA
CCTCTTGTACACTCTGCCTCTATCCCCCCTGGCAGGGGGCAGGGAGACCCTCTCTTCCTG
CCAAGGCCCCTTTCAGCAGCTCTGGGTGAAGCTCCAGCCAACCAAAGACACTGTCCTGCA
GCCCTGCCAGTGTGGCTGCAGTTCCTCCTGGGGCAGAGGGCTAGGCTTGACTGCGCTGCA
CAAACCTTTCTGTGGAAAGCAGCCATATCTGCAGATCCCAGCTCTCCTCTGCTCCTCTCC
ATGGCTGGAATTCAGAGGCATGTATTTCTGGAGCCCCTTGTGACAGTAACTGTTTTTTGT
TTTGTTTTTTTAATTAAACAGAAAAGATATTTGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5739568|gb|AAD50515.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5739568|gb|AAD50515.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-240, - strand, RNAz p=0.555802
               

               
               761-906, - strand, RNAz p=0.990326

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.555802
               

               
               761-906, - strand, RNAz p=0.990326

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               2-243, gnl|bosTau2|chr23 (6568567-6568808)
               

               
               2-243, gnl|canFam2|chr14 (26634995-26635243)
               

               
               2-243, gnl|dasNov1|scaffold_144226 (1909-1692)
               

               
               2-243, gnl|echTel1|scaffold_85760 (4257-4505)
               

               
               2-243, gnl|galGal2|chr2 (24257585-24257833)
               

               
               2-243, gnl|hg17|chr7 (7940736-7940984)
               

               
               2-243, gnl|Hg17|chr7 (7940983-7940742)
               

               
               2-243, gnl|mm7|chr6 (8602230-8602478)
               

               
               2-243, gnl|Mm7|chr6 (8602477-8602236)
               

               
               2-243, gnl|monDom2|scaffold_1408 (4421-4175)
               

               
               2-243, gnl|oryCun1|scaffold_210302 (136447-136695)
               

               
               2-243, gnl|panTro1|chr6 (8407602-8407850)
               

               
               2-243, gnl|rheMac2|chr3 (118238377-118238126)
               

               
               2-243, gnl|rn3|chr4 (33811420-33811668)
               

               
               2-243, gnl|xenTro1|scaffold_420 (74595-74347)
               


               
               331-1174, gnl|bosTau2|chr23 (6582887-6583738)
               

               
               331-1174, gnl|Hg17|chr7 (7926916-7926062)
               

               
               331-1174, gnl|Mm7|chr6 (8589063-8588291)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-243, gnl|bosTau2|chr23 (6568567-6568808)
               

               
               2-243, gnl|canFam2|chr14 (26634995-26635243)
               

               
               2-243, gnl|dasNov1|scaffold_144226 (1909-1692)
               

               
               2-243, gnl|echTel1|scaffold_85760 (4257-4505)
               

               
               2-243, gnl|galGal2|chr2 (24257585-24257833)
               

               
               2-243, gnl|hg17|chr7 (7940736-7940984)
               

               
               2-243, gnl|Hg17|chr7 (7940983-7940742)
               

               
               2-243, gnl|mm7|chr6 (8602230-8602478)
               

               
               2-243, gnl|Mm7|chr6 (8602477-8602236)
               

               
               2-243, gnl|monDom2|scaffold_1408 (4421-4175)
               

               
               2-243, gnl|oryCun1|scaffold_210302 (136447-136695)
               

               
               2-243, gnl|panTro1|chr6 (8407602-8407850)
               

               
               2-243, gnl|rheMac2|chr3 (118238377-118238126)
               

               
               2-243, gnl|rn3|chr4 (33811420-33811668)
               

               
               2-243, gnl|xenTro1|scaffold_420 (74595-74347)
               


               
               331-1174, gnl|bosTau2|chr23 (6582887-6583738)
               

               
               331-1174, gnl|Hg17|chr7 (7926916-7926062)
               

               
               331-1174, gnl|Mm7|chr6 (8589063-8588291)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.543183)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

	121-240, - strand, RNAz p=0.555802
	761-906, - strand, RNAz p=0.990326

	2-243, gnl\|bosTau2\|chr23 (6568567-6568808)
	2-243, gnl\|canFam2\|chr14 (26634995-26635243)
	2-243, gnl\|dasNov1\|scaffold_144226 (1909-1692)
	2-243, gnl\|echTel1\|scaffold_85760 (4257-4505)
	2-243, gnl\|galGal2\|chr2 (24257585-24257833)
	2-243, gnl\|hg17\|chr7 (7940736-7940984)
	2-243, gnl\|Hg17\|chr7 (7940983-7940742)
	2-243, gnl\|mm7\|chr6 (8602230-8602478)
	2-243, gnl\|Mm7\|chr6 (8602477-8602236)
	2-243, gnl\|monDom2\|scaffold_1408 (4421-4175)
	2-243, gnl\|oryCun1\|scaffold_210302 (136447-136695)
	2-243, gnl\|panTro1\|chr6 (8407602-8407850)
	2-243, gnl\|rheMac2\|chr3 (118238377-118238126)
	2-243, gnl\|rn3\|chr4 (33811420-33811668)
	2-243, gnl\|xenTro1\|scaffold_420 (74595-74347)

	331-1174, gnl\|bosTau2\|chr23 (6582887-6583738)
	331-1174, gnl\|Hg17\|chr7 (7926916-7926062)
	331-1174, gnl\|Mm7\|chr6 (8589063-8588291)