Non-Coding RNA Search

Ss1.1-Mixc-0031,a20.3

Sequence:


               
               TTTTTTTTTGCAGACTACACAGAATGCAGTTGTCTTGACCTCAGGTCTGTCTGTTCTGTT
GGCAAGTAATAATGCAGTACTGTTCTGACCTGCTGCTATTAGAATGCATTGTGAAACGAC
TGGAGTATGATTAAAAGTTATGTTTCCCCCAATGCTTGGAGTAGTGATTGTTGAAGGAAA
ATCCACTGAGTGATAAAAGGCTGAGTGTTGAGGAAATTTCTGCAGCTTTAAGCATTCATG
TTTGTGATTGAAGCAGTCCTTTTTGCTGTGCTTTAGGTAAAATGCTTTTTGTTCACTTCT
GGTAGGGGGGGTGGGGAGGGCACTGAAGCCTTTAGTCTTTTCCAGATGCAACTTTAAAAT
CAGTGACAAGAAATAAGTTCCAAACGAACAACAGACTTCAAGAAGTTTAACTGGCAAGTG
GAAACGTTTTAACATCAGTTCAGTGGTCTTAGTGCATTGTGTGTGCAGGTTTCTCTCTTC
CCTCCCTTGGTCTCAATTCTTATACACAGGAACATTCAGAACAACAGATGAAGGGCCAGA
GAAGCCAGACCCAGTAAGGAAAAAAAAATAGTTCATTTGCTTTTAATAAACAAACCAAAC
ATTCCATTTAAATGTGGGGATTGGGAACCACTAGTTCTTTCAGATGGTACTCTTCAGACT
AGAAGGAGCTTCCAGTTGAATTCACCAGGGGACAAAATGAGGACAACAGGTGAACAAGCT
TTTTCTACGTTTACATACCAAGTCAGATCTGTTCCGGGTAAATTAGTGTCAAATGGCCTT
TCATTTCAGCTTTATGCTGGAATAAACAGCATGAGCAAGTTTGTTGGCCTGGGGGTGGAG
GGGTGAGGTGGGCGCTAAGCCTTTTTTTTAAGATTTTTCAGGTACCCCTCAATAAAGGCA
CCCGAAGGCTTAAAGTAGGACAACCCTGGCGCCTTCCTGTGGCAAGAGAGACAACAAAGC
GCTATTAAACTAAGGTCAATCTAAGTGGTGTCAGCCTCACAACCCCACCTTCGGTTAGAC
ATGAGGACTTGCCTCAACTGCCTCTGGGGAGTGAAGCATCCAAAGGAATGCCTGCGTACC
TTGCGTACCCCCGGCCTGTGTAACGCCTCCCTGGGCTGTTTTTAGAGCAGCCCTTGATGA
AGCCCAGACCTGAGTGGTGCTTGAAGGGGAGGGAAAGGGGGAAAGCGGGCAACCACTTCT
CCCTAGCTTTTCCAGAAACCTGTTAAAAAGCAAGGTCTCCCCACAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTGCAGACTACACAGAATGCAGTTGTCTTGACCTCAGGTCTGTCTGTTCTGTT
GGCAAGTAATAATGCAGTACTGTTCTGACCTGCTGCTATTAGAATGCATTGTGAAACGAC
TGGAGTATGATTAAAAGTTATGTTTCCCCCAATGCTTGGAGTAGTGATTGTTGAAGGAAA
ATCCACTGAGTGATAAAAGGCTGAGTGTTGAGGAAATTTCTGCAGCTTTAAGCATTCATG
TTTGTGATTGAAGCAGTCCTTTTTGCTGTGCTTTAGGTAAAATGCTTTTTGTTCACTTCT
GGTAGGGGGGGTGGGGAGGGCACTGAAGCCTTTAGTCTTTTCCAGATGCAACTTTAAAAT
CAGTGACAAGAAATAAGTTCCAAACGAACAACAGACTTCAAGAAGTTTAACTGGCAAGTG
GAAACGTTTTAACATCAGTTCAGTGGTCTTAGTGCATTGTGTGTGCAGGTTTCTCTCTTC
CCTCCCTTGGTCTCAATTCTTATACACAGGAACATTCAGAACAACAGATGAAGGGCCAGA
GAAGCCAGACCCAGTAAGGAAAAAAAAATAGTTCATTTGCTTTTAATAAACAAACCAAAC
ATTCCATTTAAATGTGGGGATTGGGAACCACTAGTTCTTTCAGATGGTACTCTTCAGACT
AGAAGGAGCTTCCAGTTGAATTCACCAGGGGACAAAATGAGGACAACAGGTGAACAAGCT
TTTTCTACGTTTACATACCAAGTCAGATCTGTTCCGGGTAAATTAGTGTCAAATGGCCTT
TCATTTCAGCTTTATGCTGGAATAAACAGCATGAGCAAGTTTGTTGGCCTGGGGGTGGAG
GGGTGAGGTGGGCGCTAAGCCTTTTTTTTAAGATTTTTCAGGTACCCCTCAATAAAGGCA
CCCGAAGGCTTAAAGTAGGACAACCCTGGCGCCTTCCTGTGGCAAGAGAGACAACAAAGC
GCTATTAAACTAAGGTCAATCTAAGTGGTGTCAGCCTCACAACCCCACCTTCGGTTAGAC
ATGAGGACTTGCCTCAACTGCCTCTGGGGAGTGAAGCATCCAAAGGAATGCCTGCGTACC
TTGCGTACCCCCGGCCTGTGTAACGCCTCCCTGGGCTGTTTTTAGAGCAGCCCTTGATGA
AGCCCAGACCTGAGTGGTGCTTGAAGGGGAGGGAAAGGGGGAAAGCGGGCAACCACTTCT
CCCTAGCTTTTCCAGAAACCTGTTAAAAAGCAAGGTCTCCCCACAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               812-966, + strand, RNAz p=0.876517

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               812-966, + strand, RNAz p=0.876517

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1043, gnl|bosTau2|chr29 (38601491-38602559)
               

               
               1-1043, gnl|Hg17|chr11 (65028360-65029387)
               

               
               1-1043, gnl|Mm7|chr19 (5692539-5691521)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1043, gnl|bosTau2|chr29 (38601491-38602559)
               

               
               1-1043, gnl|Hg17|chr11 (65028360-65029387)
               

               
               1-1043, gnl|Mm7|chr19 (5692539-5691521)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-1043, gnl\|bosTau2\|chr29 (38601491-38602559)
	1-1043, gnl\|Hg17\|chr11 (65028360-65029387)
	1-1043, gnl\|Mm7\|chr19 (5692539-5691521)