Non-Coding RNA Search

Ss1.1-Mixc-0031,b03.3.5

Sequence:


               
               CAGTCGCCGCTGCTACCGCCACTGCCGCCCGCACGTCTGCAACTCCTCGGCCAGCCCGCT
ACTTGCCGGGCCCTTGGCCTACCGCTTCCGCCCCTCTCCTGCTGCGCCCGCCCTCCTCTT
CCTCGACCTGACGCCCCCCTCCCGCCCGGAAAGCTGCCCAGCCACCAGCAACCCCCCAGT
GCCACCATGGCAACTGCACCATACAACTACTCTTACATCTTTAAATATATTATTATTGGG
GACATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAGTTTATGGCT
GACTGTCCTCACACAATTGGTGTTGAATTTGGTACAAGAATAATTGAAGTTAGTGGCCAA
AAAATCAAACTGCAAATTTGGGATACAGCAGGACAGGAGAGGTTTAGAGCTGTCACACGA
AGCTACTACAGAGGAGCTGCAGGAGCACTTATGGTGTATGATATTACTAGAAGAAGTACA
TATAACCACTTAAGCAGCTGGTTGACAGATGCAAGGAATCTCACCAATCCAAATACGGTA
ATAATTCTCATAGGAAATAAAGCAGATTTGGAGGCACAAAGAGATGTTACATATGAAGAA
GCCAAACAGTTTGCTGAAGAAAATGGCTTATTGTTCCTTGAAGCAAGTGCAAAAACGGGA
GAGAACGTAGAAGATGCTTTCCTTGAGGCTGCCAAGAAAATCTATCAGAACATTCAGGAT
GGAAGCTTGGATCTGAATGCTGCCGAGTCTGGTGTACAACACAAACCTTCAGCCCCACAA
GGAGGCCGGCTAACCAGTGAACCCCAACCCCAGAGAGAAGGCTGTGGTTGCTAGTGACCT
CTTTGCCGTGGCTCTCATTTGACCTTTCACCTCTGTCTGTTGGAAGCAGTACTTTTTACT
GCCTCATTGTCTTCTGTACATCTTACTGGGTTTAATTAAAAAGAAAAAAACAACTCTGTT
GTAAAAAACAGTTTAACACGATACTAAACTGCTAAACAACTAGATGTAATCAGGTTATCA
AAGGCAAGTAGAGTAATAAATCTCTCCTGCATGGTAAATCTAGACTTTTTTTCCCCCTTG
ATTGTCCTCGTGATAGGTATGTCACCAATACATGATTTAAACTGAGCACTGATGCCGGAC
TTGATTTTTACCCCTTCCTCTTTTTGGCAAGGCTTTGTCTCATTGTACGGTTTAATTTGA
TGATGTCTTAAGCCTTTCTTCCCATCTTTAGCTGTTCAAGTATGTCTGTTGTAACCCGTA
AGTTTATTGCTGTGAAATGACTTCTGATGATAGAGAAGGGGTTCTTGTAACACCTTTTGT
TTTTGTTTTTGTTGGATAAATTCCCTGTTGTGTGGGTGGCATTTTTCTTGAGGAGGTTTG
CTTCTGTCTTAGCCTTGCACGGGGAAAATATCCATTTATCTTTTCTCTTGTGTTTAATTA
ATAGCTTTATCTTTTTTTTTTTTTACACCATTTTATCTTTTCCTCTTTAGCAGAAAGTAA
ATATGTATAAAATTTGAAGGAACCGAACTAACAATACATTCTGTGTATATTATTTTAATG
AAGAAAATAAATTGATTACTGGCATTGGAACAGTATAAAATACCAGTTTGTACAGTATGA
CCTGTATGTGACCATGTTTCTCCCTTTCATTTCATATAAGGAAATAGACACAACTGCAGT
TCACACAATATACTGGCTCCACCCTTTGGTGCTGGCAGTGTTTGGGGACATTATGCTGGA
AAGAGCTCCTGGCGTGAGAGGATTAACACTAGCAGATTCTGTTCCATCTTTGCACTGTGG
CTTACCTGCTGATTTTCTTAACTGTTCTTGTGCAATCAACAATGTGCTAACCTGCTTTTC
TCTTTTTGTAAACGTTTTGCATTACAGGCTGCATTTCTTGCCTTACTGTATAGAAAAAGA
AAAAAGGCTGGGTTTATTATTGCACATTTTAAGCTTTTATACCTTTATCTTCCTTGGAAT
GGTGAGATTCTGAACCAGACAGCCAGAACCGCAGGTCTGCTGTTAAGGGATTTTAAATTG
TGCATTTTTTAATACTACAGTGAAATAACTTAAGAGATCCCTTGTGTTCTTAGTATGAGG
GGCTATTTTTTGTCATGTTGGCATAAATTGTTTTGTAAAAGGGAAAGTGTTTCTAACGGT
GTTTCAATGTTTGTGCTGATATAAAGTAAGTTATTACTTTACACTTCGGTGGTTTGGCCA
CTGACAGAATACTGTATTGAGCAAGGGAAACAATCTTATTTCTTTAGACAACAAACCTAT
CTTTTATCACGTTCTGTACTTCTGTTGATTTTTAATTGAGTTTAGGGTTCAGGTTCGGAA
CTGAGAAGTTATTTGAAGTAGGATAGGTAAACTTCTGTGTATGATATAAAAAATGTACTC
CCAGCTCAACTGCTGTGTTCAAAAATACACATTTTAAATCCCTATTTACAGACACTAAAG
TAAAAAAATACAGCTTTCTGGGTTGTAAACATGTGGTAGTACCAGAGTATTGTATAGTCA
ATGTTAATAAAAGCCAAAACTGGAATGTGCAGAAAATAGGATTTGGTTAATTTGTGGACT
CATCTTTATGTCTGTCTTTGTTTAACTTTTTGAAAAACAACATACCTGGAGTCAGGTGGT
ATATTCTGTTAAAGACTTAGACAGTGATCCATTTTGCTTACACTGTTGCATCACAAGGGA
CTCGCCCAGGGACCATGACCTGCTGGTGTGTGTATATATTTACAAAAACAAAACAAACAA
ACCACCCATTGGGATATAAGGTAGCAATCACAAACTAAAGACTGCGGCTTGTTTAGGTGC
AATACCCTGATTCCCAAAGTTAGTTACAGTGGGTCTTATTGTTTTTGTGACAGGATTTAT
TCAGACTGCTGTACTCTTCATTTGATGTAACAAAATGCTATTAATCTAAATATTTGTAAA
TAAAGTACCTGTATCTAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GCTTTCATATTTTCTTCAGGCAAACAGTTATTTGGCGTTAAGTTGCCAGTTTTTATTGCA
GAATTTTCCTTATTTGTATAAAAAGACAAGTCTACATACATAGCATATAAATCCACATTG
CTCAGTAAATGAGCTGCATTTTATCCCTGCGTTCATATCACATTTGCAATGTTTTTCAAT
CTTTTTCAGTGTGAGATCAGCACATTTGGTGCGTGATAGTGTTCTCCCTTGACTGTACTT
GGGGCCAAATTCTGTTTGCACATGTAATTCCCTATGATAAATTTGGGTGCTCAAAAACAG
AAGCAGACTGTCATATTGTAACGTGTGCCAGACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCGCCGCTGCTACCGCCACTGCCGCCCGCACGTCTGCAACTCCTCGGCCAGCCCGCT
ACTTGCCGGGCCCTTGGCCTACCGCTTCCGCCCCTCTCCTGCTGCGCCCGCCCTCCTCTT
CCTCGACCTGACGCCCCCCTCCCGCCCGGAAAGCTGCCCAGCCACCAGCAACCCCCCAGT
GCCACCATGGCAACTGCACCATACAACTACTCTTACATCTTTAAATATATTATTATTGGG
GACATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAGTTTATGGCT
GACTGTCCTCACACAATTGGTGTTGAATTTGGTACAAGAATAATTGAAGTTAGTGGCCAA
AAAATCAAACTGCAAATTTGGGATACAGCAGGACAGGAGAGGTTTAGAGCTGTCACACGA
AGCTACTACAGAGGAGCTGCAGGAGCACTTATGGTGTATGATATTACTAGAAGAAGTACA
TATAACCACTTAAGCAGCTGGTTGACAGATGCAAGGAATCTCACCAATCCAAATACGGTA
ATAATTCTCATAGGAAATAAAGCAGATTTGGAGGCACAAAGAGATGTTACATATGAAGAA
GCCAAACAGTTTGCTGAAGAAAATGGCTTATTGTTCCTTGAAGCAAGTGCAAAAACGGGA
GAGAACGTAGAAGATGCTTTCCTTGAGGCTGCCAAGAAAATCTATCAGAACATTCAGGAT
GGAAGCTTGGATCTGAATGCTGCCGAGTCTGGTGTACAACACAAACCTTCAGCCCCACAA
GGAGGCCGGCTAACCAGTGAACCCCAACCCCAGAGAGAAGGCTGTGGTTGCTAGTGACCT
CTTTGCCGTGGCTCTCATTTGACCTTTCACCTCTGTCTGTTGGAAGCAGTACTTTTTACT
GCCTCATTGTCTTCTGTACATCTTACTGGGTTTAATTAAAAAGAAAAAAACAACTCTGTT
GTAAAAAACAGTTTAACACGATACTAAACTGCTAAACAACTAGATGTAATCAGGTTATCA
AAGGCAAGTAGAGTAATAAATCTCTCCTGCATGGTAAATCTAGACTTTTTTTCCCCCTTG
ATTGTCCTCGTGATAGGTATGTCACCAATACATGATTTAAACTGAGCACTGATGCCGGAC
TTGATTTTTACCCCTTCCTCTTTTTGGCAAGGCTTTGTCTCATTGTACGGTTTAATTTGA
TGATGTCTTAAGCCTTTCTTCCCATCTTTAGCTGTTCAAGTATGTCTGTTGTAACCCGTA
AGTTTATTGCTGTGAAATGACTTCTGATGATAGAGAAGGGGTTCTTGTAACACCTTTTGT
TTTTGTTTTTGTTGGATAAATTCCCTGTTGTGTGGGTGGCATTTTTCTTGAGGAGGTTTG
CTTCTGTCTTAGCCTTGCACGGGGAAAATATCCATTTATCTTTTCTCTTGTGTTTAATTA
ATAGCTTTATCTTTTTTTTTTTTTACACCATTTTATCTTTTCCTCTTTAGCAGAAAGTAA
ATATGTATAAAATTTGAAGGAACCGAACTAACAATACATTCTGTGTATATTATTTTAATG
AAGAAAATAAATTGATTACTGGCATTGGAACAGTATAAAATACCAGTTTGTACAGTATGA
CCTGTATGTGACCATGTTTCTCCCTTTCATTTCATATAAGGAAATAGACACAACTGCAGT
TCACACAATATACTGGCTCCACCCTTTGGTGCTGGCAGTGTTTGGGGACATTATGCTGGA
AAGAGCTCCTGGCGTGAGAGGATTAACACTAGCAGATTCTGTTCCATCTTTGCACTGTGG
CTTACCTGCTGATTTTCTTAACTGTTCTTGTGCAATCAACAATGTGCTAACCTGCTTTTC
TCTTTTTGTAAACGTTTTGCATTACAGGCTGCATTTCTTGCCTTACTGTATAGAAAAAGA
AAAAAGGCTGGGTTTATTATTGCACATTTTAAGCTTTTATACCTTTATCTTCCTTGGAAT
GGTGAGATTCTGAACCAGACAGCCAGAACCGCAGGTCTGCTGTTAAGGGATTTTAAATTG
TGCATTTTTTAATACTACAGTGAAATAACTTAAGAGATCCCTTGTGTTCTTAGTATGAGG
GGCTATTTTTTGTCATGTTGGCATAAATTGTTTTGTAAAAGGGAAAGTGTTTCTAACGGT
GTTTCAATGTTTGTGCTGATATAAAGTAAGTTATTACTTTACACTTCGGTGGTTTGGCCA
CTGACAGAATACTGTATTGAGCAAGGGAAACAATCTTATTTCTTTAGACAACAAACCTAT
CTTTTATCACGTTCTGTACTTCTGTTGATTTTTAATTGAGTTTAGGGTTCAGGTTCGGAA
CTGAGAAGTTATTTGAAGTAGGATAGGTAAACTTCTGTGTATGATATAAAAAATGTACTC
CCAGCTCAACTGCTGTGTTCAAAAATACACATTTTAAATCCCTATTTACAGACACTAAAG
TAAAAAAATACAGCTTTCTGGGTTGTAAACATGTGGTAGTACCAGAGTATTGTATAGTCA
ATGTTAATAAAAGCCAAAACTGGAATGTGCAGAAAATAGGATTTGGTTAATTTGTGGACT
CATCTTTATGTCTGTCTTTGTTTAACTTTTTGAAAAACAACATACCTGGAGTCAGGTGGT
ATATTCTGTTAAAGACTTAGACAGTGATCCATTTTGCTTACACTGTTGCATCACAAGGGA
CTCGCCCAGGGACCATGACCTGCTGGTGTGTGTATATATTTACAAAAACAAAACAAACAA
ACCACCCATTGGGATATAAGGTAGCAATCACAAACTAAAGACTGCGGCTTGTTTAGGTGC
AATACCCTGATTCCCAAAGTTAGTTACAGTGGGTCTTATTGTTTTTGTGACAGGATTTAT
TCAGACTGCTGTACTCTTCATTTGATGTAACAAAATGCTATTAATCTAAATATTTGTAAA
TAAAGTACCTGTATCTAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GCTTTCATATTTTCTTCAGGCAAACAGTTATTTGGCGTTAAGTTGCCAGTTTTTATTGCA
GAATTTTCCTTATTTGTATAAAAAGACAAGTCTACATACATAGCATATAAATCCACATTG
CTCAGTAAATGAGCTGCATTTTATCCCTGCGTTCATATCACATTTGCAATGTTTTTCAAT
CTTTTTCAGTGTGAGATCAGCACATTTGGTGCGTGATAGTGTTCTCCCTTGACTGTACTT
GGGGCCAAATTCTGTTTGCACATGTAATTCCCTATGATAAATTTGGGTGCTCAAAAACAG
AAGCAGACTGTCATATTGTAACGTGTGCCAGACACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|18390323|ref|NP_080973.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|18390323|ref|NP_080973.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               2127-2246, + strand, RNAz p=0.669645

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2127-2246, + strand, RNAz p=0.669645

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_016322, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016322, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1974-2599, gnl|bosTau2|chr25 (41123259-41122637)
               

               
               1974-2599, gnl|Hg17|chr9 (121022107-121021494)
               

               
               1974-2599, gnl|Mm7|chr2 (35188459-35187870)
               


               
               2625-2761, gnl|bosTau2|chr25 (41120230-41120092)
               

               
               2625-2761, gnl|Hg17|chr9 (121021468-121021334)
               

               
               2625-2761, gnl|Mm7|chr2 (35187852-35187713)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1974-2599, gnl|bosTau2|chr25 (41123259-41122637)
               

               
               1974-2599, gnl|Hg17|chr9 (121022107-121021494)
               

               
               1974-2599, gnl|Mm7|chr2 (35188459-35187870)
               


               
               2625-2761, gnl|bosTau2|chr25 (41120230-41120092)
               

               
               2625-2761, gnl|Hg17|chr9 (121021468-121021334)
               

               
               2625-2761, gnl|Mm7|chr2 (35187852-35187713)

Expressed library(ies): 54 entry(ies)

More info

Expressed library(ies): 54 entry(ies)

Help | Less info


               
               pro (1.02407)
               

               
               cbe (0.956938)
               

               
               liv (0.731422)
               

               
               sin (0.69979)
               

               
               cbl (0.688784)
               

               
               ski (0.586941)
               

               
               lin (0.582411)
               

               
               ret (0.514933)
               

               
               eye (0.511509)
               

               
               bla (0.497389)
               

               
               ece (0.45861)
               

               
               fat (0.442282)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 54 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               cbe (0.956938)
               

               
               liv (0.731422)
               

               
               sin (0.69979)
               

               
               cbl (0.688784)
               

               
               ski (0.586941)
               

               
               lin (0.582411)
               

               
               ret (0.514933)
               

               
               eye (0.511509)
               

               
               bla (0.497389)
               

               
               ece (0.45861)
               

               
               fat (0.442282)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1974-2599, gnl\|bosTau2\|chr25 (41123259-41122637)
	1974-2599, gnl\|Hg17\|chr9 (121022107-121021494)
	1974-2599, gnl\|Mm7\|chr2 (35188459-35187870)

	2625-2761, gnl\|bosTau2\|chr25 (41120230-41120092)
	2625-2761, gnl\|Hg17\|chr9 (121021468-121021334)
	2625-2761, gnl\|Mm7\|chr2 (35187852-35187713)

	pro (1.02407)
	cbe (0.956938)
	liv (0.731422)
	sin (0.69979)
	cbl (0.688784)
	ski (0.586941)
	lin (0.582411)
	ret (0.514933)
	eye (0.511509)
	bla (0.497389)
	ece (0.45861)
	fat (0.442282)
	aor (0.390549)
	elu (0.385356)
	sag (0.36543)
	pgl (0.35545)
	fhi (0.339155)
	vin (0.332557)
	nje (0.33184)
	lun (0.300978)
	isp (0.300752)
	pla (0.267344)
	kid (0.259471)
	jca (0.22792)
	cty (0.20816)
	tes (0.207814)
	fcc (0.197785)
	col (0.195008)
	nlu (0.191681)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	rec (0.17307)
	duo (0.172801)
	mcp (0.170648)
	cli (0.152812)
	bfe (0.149858)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	ste (0.135208)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)
	ldo (0.0970026)