Non-Coding RNA Search

Ss1.1-Mixc-0031,b04.3

Sequence:


               
               TACCATCTCACCCATAATCAAATTGCTCAAGGAATCGGGTGCAAAAGAGGTGCACATTCG
TGTAGCTTCACCACCAATCAGATATCCGTGCTTCATGGGAATAAACATACCAACCAAAGA
AGAGCTGATTGCCAATAAACCAGAATTTGAGCATATTTCAGATTATCTAGGAGCAAACAG
TGTCGTGTACCTGTCGGTAGAAGGACTGGTTTCATCTGTACGAGAAGGGATAACATTTAA
GCAACAGAAAGTGCTGAAGCGGGACGGTGTGGGCCGAGAGGATGGGGTCACTCTGGAATG
CGATGAAAAGAATGGTCACTGTGCAGAGGGGGACAGTGTGGGCCAAGCAGATGGGTACCT
GGAATCTGGTGGAAAGAACGGTCACTGTACAGCTTGTCTGACTGGAAAATACCCTGTGGA
GTTGGATTGGTAGCTGCTGGGGCAGACGTGCTGTTTCCAGACACAAAGCTGGTGAAGAAG
CTGCCATGGTCCCACCTTATCCATTTCCCGTTCCTCAGTTGGTCCAGTGTGAAATGCCAC
GTGCTTGAGTTGTCAGTTCAGAGAGTTTTTGTCTGAAAGGTACCAAAGTGCTTTCTTTAG
TAATCCTAGATAAATGCTTTGGTGTTGTCTAGGAACATGGACGGTCCTTTCAATTTTCTG
CAGTAGTTGAGTACTTTCAGTTCTATGAGATTGTATGCATTTAATTTCAGATCATCAACT
GTAATGAAAAGAATAGGTAAGTTTGAGAGCAGATTGCCAGGTACTGTACTTCCCCACAGA
TTTTTAGAGAATGTTGTGGAATGTTTCTTGAGAGTTACTGAAATTTAGTTATGGGATACT
TTCATCACTGGACCTTGTTAATTGCATGGGATTCAGCAGTATGTCCTATTCTTTTTCTTT
TCTCAAGCCTTGGCCAGCCTTTTCCACCTGGTCAGAGAAGGCAGGTGAAGGGTGGCATTT
GCTCCATGTTTTAAAGGGTTTGCAAGAGGTTAGAGTAAGGGGGTGTGATGCAGACAGAAC
ATGTGGTTTACATATAACCTTTCATACAGACCTTGAGTCCATAGTACCCAAAGTTACCTA
GCATCTAGAGTTCTTAAAAAAAAAACACATCAAAACAAAAAACATATCCTTTTGTGCCTC
ACTTCCCCACCTGTGCAATGAGGTATTTATATTATGAAATAACCAGCAGTAGTTATATGG
GTGGTTAGAGCCATTATTCCATCCCTTAATTTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCATCTCACCCATAATCAAATTGCTCAAGGAATCGGGTGCAAAAGAGGTGCACATTCG
TGTAGCTTCACCACCAATCAGATATCCGTGCTTCATGGGAATAAACATACCAACCAAAGA
AGAGCTGATTGCCAATAAACCAGAATTTGAGCATATTTCAGATTATCTAGGAGCAAACAG
TGTCGTGTACCTGTCGGTAGAAGGACTGGTTTCATCTGTACGAGAAGGGATAACATTTAA
GCAACAGAAAGTGCTGAAGCGGGACGGTGTGGGCCGAGAGGATGGGGTCACTCTGGAATG
CGATGAAAAGAATGGTCACTGTGCAGAGGGGGACAGTGTGGGCCAAGCAGATGGGTACCT
GGAATCTGGTGGAAAGAACGGTCACTGTACAGCTTGTCTGACTGGAAAATACCCTGTGGA
GTTGGATTGGTAGCTGCTGGGGCAGACGTGCTGTTTCCAGACACAAAGCTGGTGAAGAAG
CTGCCATGGTCCCACCTTATCCATTTCCCGTTCCTCAGTTGGTCCAGTGTGAAATGCCAC
GTGCTTGAGTTGTCAGTTCAGAGAGTTTTTGTCTGAAAGGTACCAAAGTGCTTTCTTTAG
TAATCCTAGATAAATGCTTTGGTGTTGTCTAGGAACATGGACGGTCCTTTCAATTTTCTG
CAGTAGTTGAGTACTTTCAGTTCTATGAGATTGTATGCATTTAATTTCAGATCATCAACT
GTAATGAAAAGAATAGGTAAGTTTGAGAGCAGATTGCCAGGTACTGTACTTCCCCACAGA
TTTTTAGAGAATGTTGTGGAATGTTTCTTGAGAGTTACTGAAATTTAGTTATGGGATACT
TTCATCACTGGACCTTGTTAATTGCATGGGATTCAGCAGTATGTCCTATTCTTTTTCTTT
TCTCAAGCCTTGGCCAGCCTTTTCCACCTGGTCAGAGAAGGCAGGTGAAGGGTGGCATTT
GCTCCATGTTTTAAAGGGTTTGCAAGAGGTTAGAGTAAGGGGGTGTGATGCAGACAGAAC
ATGTGGTTTACATATAACCTTTCATACAGACCTTGAGTCCATAGTACCCAAAGTTACCTA
GCATCTAGAGTTCTTAAAAAAAAAACACATCAAAACAAAAAACATATCCTTTTGTGCCTC
ACTTCCCCACCTGTGCAATGAGGTATTTATATTATGAAATAACCAGCAGTAGTTATATGG
GTGGTTAGAGCCATTATTCCATCCCTTAATTTTAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62088072|dbj|BAD92483.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62088072|dbj|BAD92483.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               562-673, + strand, RNAz p=0.999904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               562-673, + strand, RNAz p=0.999904

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               168-1236, gnl|bosTau2|chr6 (35375162-35376235)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-1236, gnl|bosTau2|chr6 (35375162-35376235)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)