Non-Coding RNA Search

Ss1.1-Mixc-0031,b06.3

Sequence:


               
               CTTTTTCCTCTTGGAATTCTGTTGAATGTTTCACGTTGACCAGGAAGTAGACTGGAAGGT
ATGTCCTGTAAGTTGTCTTGCATCCATTGGTGAGAAAGACACAGGCGAGAGGGAGAGAGG
AGAGCTGAGACGGGCTGGTGTTCAGAGCATTCACTTCTGCAGAGGGAAAGTCAGGCCCCA
CACTCAGCACACCGGGGGTTTGGGGTTTTTTTCAGATCTGAAGGTGGCTTCCATGACGCT
GGCCGAGGACACCTCCTAAAAGTCACGCGGCGTTGACTGGGCCCCAGGCCGGCCTCTGCC
CAGCTGGCTCTCTGTCCCCAGTGGTGCCCGGGCTCAGTCCCCTCCCGAGATTCCGTCGGT
GCCACGCAAGGGGTTTCCTTGGCTTCGCTTTTGAGAGTCCCTTCCTTTCGCCCCCCGATC
TCAGCTGGTGCAGAAGAACGATCGAAACCCAGAGATGCGTGTACACGGCGAGTCGGAAAC
TTCCCTCCCGTCCGCCCAGAGCTGAAGTTCGGGATCCTGGCGGACGGAGAGGCCTGAGCC
TGGAGCCGCTCTGTGGGGAGAGAGTCTGGGCTTCGCGGCCTCCGTCCTGCACCGCCTTCC
ACGCGGGCTGCCTCGGGCCCCGGGCGGCCTCTTGGGGGAAATGGGCCGCTTCTGCTTGGA
TCGTTGGCAGGGCTGCTCACAGCTTTGCTGTCCCCACTAACCCCATAGCATCAGTGCAGT
GTTTCCACCTCCCACCCCGATTCCTGGCTTCGTCGAGCTGACTGTTCTTGCAGGGCCACT
TGCTTCTCTTAGAGGACAAAGTGAGGGCCTTCCTTACTAACCGCAGGGTCTGTCACACCT
CAGTGTCCTACTTGCTGCTACTGTTTGTACTGTGTCCACAGTAGAAGTTCCTTATCTTGC
TCCTGGTAATGCATTACAGGCCAGCATGAAATGTTAAACTATTTATTTAAATAAAAAGGA
AACCTCTAAATTGGTAATTGAATTACCTCCCTGTAGCTTTATAGTTTGTGACATTTCTTG
ACCTTTGCTAGTTCTTTCATTAGATCCGCGCGAGATCCAGTCACCTGGTTAAGGATTTTA
AGCTGAAGCAACTATGAACCCAAGAACCTGTATTACTCTTACTGTCGGTCATACTAAAAC
TGTTTATTTCCTTAAGGATATGGCCCACAAGGATGTGAAATAACTACAAGAAACTGTTTT
GTACACTGTACATCCTCAGTATTTTTACACGTCTGATAGGGATGCACATTATTTTCCTTC
GTGCAGACAGCTTAAATAAAGCACTATGTCAATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTCCTCTTGGAATTCTGTTGAATGTTTCACGTTGACCAGGAAGTAGACTGGAAGGT
ATGTCCTGTAAGTTGTCTTGCATCCATTGGTGAGAAAGACACAGGCGAGAGGGAGAGAGG
AGAGCTGAGACGGGCTGGTGTTCAGAGCATTCACTTCTGCAGAGGGAAAGTCAGGCCCCA
CACTCAGCACACCGGGGGTTTGGGGTTTTTTTCAGATCTGAAGGTGGCTTCCATGACGCT
GGCCGAGGACACCTCCTAAAAGTCACGCGGCGTTGACTGGGCCCCAGGCCGGCCTCTGCC
CAGCTGGCTCTCTGTCCCCAGTGGTGCCCGGGCTCAGTCCCCTCCCGAGATTCCGTCGGT
GCCACGCAAGGGGTTTCCTTGGCTTCGCTTTTGAGAGTCCCTTCCTTTCGCCCCCCGATC
TCAGCTGGTGCAGAAGAACGATCGAAACCCAGAGATGCGTGTACACGGCGAGTCGGAAAC
TTCCCTCCCGTCCGCCCAGAGCTGAAGTTCGGGATCCTGGCGGACGGAGAGGCCTGAGCC
TGGAGCCGCTCTGTGGGGAGAGAGTCTGGGCTTCGCGGCCTCCGTCCTGCACCGCCTTCC
ACGCGGGCTGCCTCGGGCCCCGGGCGGCCTCTTGGGGGAAATGGGCCGCTTCTGCTTGGA
TCGTTGGCAGGGCTGCTCACAGCTTTGCTGTCCCCACTAACCCCATAGCATCAGTGCAGT
GTTTCCACCTCCCACCCCGATTCCTGGCTTCGTCGAGCTGACTGTTCTTGCAGGGCCACT
TGCTTCTCTTAGAGGACAAAGTGAGGGCCTTCCTTACTAACCGCAGGGTCTGTCACACCT
CAGTGTCCTACTTGCTGCTACTGTTTGTACTGTGTCCACAGTAGAAGTTCCTTATCTTGC
TCCTGGTAATGCATTACAGGCCAGCATGAAATGTTAAACTATTTATTTAAATAAAAAGGA
AACCTCTAAATTGGTAATTGAATTACCTCCCTGTAGCTTTATAGTTTGTGACATTTCTTG
ACCTTTGCTAGTTCTTTCATTAGATCCGCGCGAGATCCAGTCACCTGGTTAAGGATTTTA
AGCTGAAGCAACTATGAACCCAAGAACCTGTATTACTCTTACTGTCGGTCATACTAAAAC
TGTTTATTTCCTTAAGGATATGGCCCACAAGGATGTGAAATAACTACAAGAAACTGTTTT
GTACACTGTACATCCTCAGTATTTTTACACGTCTGATAGGGATGCACATTATTTTCCTTC
GTGCAGACAGCTTAAATAAAGCACTATGTCAATCTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               263-404, - strand, RNAz p=0.998549
               

               
               789-902, - strand, RNAz p=0.731049
               

               
               1102-1258, - strand, RNAz p=0.797711

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-404, - strand, RNAz p=0.998549
               

               
               789-902, - strand, RNAz p=0.731049
               

               
               1102-1258, - strand, RNAz p=0.797711

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               2-1296, gnl|bosTau2|chr16 (18783198-18784539)
               

               
               2-1296, gnl|Hg17|chr1 (239992444-239991109)
               

               
               2-1296, gnl|Mm7|chr1 (176989669-176988403)
               


               
               3-209, gnl|bosTau2|chr14 (41426159-41425950)
               

               
               3-209, gnl|Hg17|chr1 (239992454-239992249)
               

               
               3-209, gnl|Mm7|chr1 (176989668-176989476)
               


               
               213-554, gnl|bosTau2|chr14 (41425910-41425552)
               

               
               213-554, gnl|Hg17|chr1 (239992226-239991866)
               

               
               213-554, gnl|Mm7|chr1 (176989453-176989116)
               


               
               562-1078, gnl|bosTau2|chr14 (41425518-41424995)
               

               
               562-1078, gnl|Hg17|chr1 (239991846-239991299)
               

               
               562-1078, gnl|Mm7|chr1 (176989095-176988621)
               


               
               1102-1294, gnl|bosTau2|chr14 (41425002-41424807)
               

               
               1102-1294, gnl|Hg17|chr1 (239991337-239991111)
               

               
               1102-1294, gnl|Mm7|chr1 (176988628-176988405)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1296, gnl|bosTau2|chr16 (18783198-18784539)
               

               
               2-1296, gnl|Hg17|chr1 (239992444-239991109)
               

               
               2-1296, gnl|Mm7|chr1 (176989669-176988403)
               


               
               3-209, gnl|bosTau2|chr14 (41426159-41425950)
               

               
               3-209, gnl|Hg17|chr1 (239992454-239992249)
               

               
               3-209, gnl|Mm7|chr1 (176989668-176989476)
               


               
               213-554, gnl|bosTau2|chr14 (41425910-41425552)
               

               
               213-554, gnl|Hg17|chr1 (239992226-239991866)
               

               
               213-554, gnl|Mm7|chr1 (176989453-176989116)
               


               
               562-1078, gnl|bosTau2|chr14 (41425518-41424995)
               

               
               562-1078, gnl|Hg17|chr1 (239991846-239991299)
               

               
               562-1078, gnl|Mm7|chr1 (176989095-176988621)
               


               
               1102-1294, gnl|bosTau2|chr14 (41425002-41424807)
               

               
               1102-1294, gnl|Hg17|chr1 (239991337-239991111)
               

               
               1102-1294, gnl|Mm7|chr1 (176988628-176988405)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               cst (0.140036)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               cst (0.140036)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	263-404, - strand, RNAz p=0.998549
	789-902, - strand, RNAz p=0.731049
	1102-1258, - strand, RNAz p=0.797711

	2-1296, gnl\|bosTau2\|chr16 (18783198-18784539)
	2-1296, gnl\|Hg17\|chr1 (239992444-239991109)
	2-1296, gnl\|Mm7\|chr1 (176989669-176988403)

	3-209, gnl\|bosTau2\|chr14 (41426159-41425950)
	3-209, gnl\|Hg17\|chr1 (239992454-239992249)
	3-209, gnl\|Mm7\|chr1 (176989668-176989476)

	213-554, gnl\|bosTau2\|chr14 (41425910-41425552)
	213-554, gnl\|Hg17\|chr1 (239992226-239991866)
	213-554, gnl\|Mm7\|chr1 (176989453-176989116)

	562-1078, gnl\|bosTau2\|chr14 (41425518-41424995)
	562-1078, gnl\|Hg17\|chr1 (239991846-239991299)
	562-1078, gnl\|Mm7\|chr1 (176989095-176988621)

	1102-1294, gnl\|bosTau2\|chr14 (41425002-41424807)
	1102-1294, gnl\|Hg17\|chr1 (239991337-239991111)
	1102-1294, gnl\|Mm7\|chr1 (176988628-176988405)

	fcc (0.39557)
	clu (0.239292)
	mgp (0.230681)
	aor (0.195274)
	cst (0.140036)
	tra (0.123092)
	ebs (0.118301)