Non-Coding RNA Search

Ss1.1-Mixc-0031,h19.5

Sequence:


               
               TTTTTTTTTTGCCTGCAGAATCGTTGAGAGACTAGTAAATCTTAATATTTAATTGACTTG
TTTAATAAATGTTACATAGATGTAAAAGACTGTATAAACTGTAGAAATAGCATTGGCAAG
ACTTTGTACAGGTGCAACCTCTTATGCAACACCATTGTGTAATTTGTAAAGATTCACATA
TAGCTCTTTATTATAGTGGTTTTTGGCTTTTGTACCAATTGAATGCCATTTTTTGTGTGT
TTTAAATTATTTTCTTTATCTTTTCATGTTACAGAAGCTGAGGTGTGGGTTTTTTGTTGG
AGTTCATTTATCGTTAGAATGTCTGAATTCTTATTGTAACTTTTTGTGTGCATCTCTAAA
TGCGAACGCCACCTGTTTGCCTATGACCAGTTTATAGAATTCAAGATATCTTCTAGGTTC
AAGTAATTCACAAATTGGTGAATGTCATCTTGCAACACACCCTGTACAGTCTTCCTTAAA
GGAACATTACAGTATATTTTTTAGTATCTACTTGCTGAATGACTACAGACCTAAGCACAG
CAGAGTTCCCAGTACAGTATTTAAGTGTCAGCATACACAGGTGTAATCCCTGTATAGAGT
AGTGCCAAACTGATTACTTCAATTGTGTAACTAGTTTAAAACCCAATAAATGGATTGTTT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTGCCTGCAGAATCGTTGAGAGACTAGTAAATCTTAATATTTAATTGACTTG
TTTAATAAATGTTACATAGATGTAAAAGACTGTATAAACTGTAGAAATAGCATTGGCAAG
ACTTTGTACAGGTGCAACCTCTTATGCAACACCATTGTGTAATTTGTAAAGATTCACATA
TAGCTCTTTATTATAGTGGTTTTTGGCTTTTGTACCAATTGAATGCCATTTTTTGTGTGT
TTTAAATTATTTTCTTTATCTTTTCATGTTACAGAAGCTGAGGTGTGGGTTTTTTGTTGG
AGTTCATTTATCGTTAGAATGTCTGAATTCTTATTGTAACTTTTTGTGTGCATCTCTAAA
TGCGAACGCCACCTGTTTGCCTATGACCAGTTTATAGAATTCAAGATATCTTCTAGGTTC
AAGTAATTCACAAATTGGTGAATGTCATCTTGCAACACACCCTGTACAGTCTTCCTTAAA
GGAACATTACAGTATATTTTTTAGTATCTACTTGCTGAATGACTACAGACCTAAGCACAG
CAGAGTTCCCAGTACAGTATTTAAGTGTCAGCATACACAGGTGTAATCCCTGTATAGAGT
AGTGCCAAACTGATTACTTCAATTGTGTAACTAGTTTAAAACCCAATAAATGGATTGTTT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-664, gnl|bosTau2|chr11 (25666191-25665522)
               

               
               1-664, gnl|Hg17|chr2 (54003514-54002857)
               

               
               1-664, gnl|Mm7|chr11 (30832516-30833156)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-664, gnl|bosTau2|chr11 (25666191-25665522)
               

               
               1-664, gnl|Hg17|chr2 (54003514-54002857)
               

               
               1-664, gnl|Mm7|chr11 (30832516-30833156)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               isp (0.451128)
               

               
               fhi (0.339155)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.451128)
               

               
               fhi (0.339155)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-664, gnl\|bosTau2\|chr11 (25666191-25665522)
	1-664, gnl\|Hg17\|chr2 (54003514-54002857)
	1-664, gnl\|Mm7\|chr11 (30832516-30833156)

	isp (0.451128)
	fhi (0.339155)
	bfe (0.299715)
	mgp (0.230681)
	nms (0.213858)
	hea (0.204499)
	mga (0.160205)
	pty (0.142714)
	ssp (0.13552)
	ste (0.135208)
	tra (0.123092)
	ecc (0.115035)
	nbm (0.0993246)
	ldo (0.0970026)