Ss1.1-Mixc-0031,p12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCCTTCTACAAAATGGGAATCTTTTCTGCACCCGAGAAAATGATCCTGTGCGTGGCCC AGACGGCAAGACCCACGGCAACAAGTGCGCCATGTGCAAGGAAGTCTTCCAGAAAGAAGA TGAAGAAAGAAAGAGAAAAGAAGGGGAAGATCAGAGAAATGCTGCAGGCCGGGGTCCTAG TGATGGCGGAGGAGAGAAAGCTCAGGACCAATGTGCCGAGTATAAGGAAAAAATGAAAAA TGGAAAACTCAGCTGTACCCGAGAGAGGGATCCTGTGCGAGACGCTGACGGCAAATTGTT CAACAATAAGTGCATCATGTGTAAGGAGAAACTGCAAAAAGAAGCTGAGGGAAAAAATAA GCATTCCACCTACAGATCAAATGGGACTGAATCAGCATCAAGAAAGGATGTATGTGACGA GTTTAGAAGTCAAATGAAAAATGGGCAACTTATTTGCACCCGAGAAAGCGACCCTGTCCG AGGTCCAGACGGCAAGACACATGGAAATAAGTGTGCTATGTGTAAGGAGAAACTGGAAAG GGAAGCTGCTGAAAAAAAGAAAGAAGAGGGTGACAGGAGAAACACAAACAAAAATAATGA TGCAAAACAGGATCAGTGTCATGAATTCCGGAACATGGTGAAAGACGGAAAGCTTATCTG CACCAGAGAAAACAACCCTGTTCGAGGTCCAGATGGCAAGATGCACATCAACAAGTGTGC CATGTGTCAGAGCATCTTTGAGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCCTTCTACAAAATGGGAATCTTTTCTGCACCCGAGAAAATGATCCTGTGCGTGGCCC AGACGGCAAGACCCACGGCAACAAGTGCGCCATGTGCAAGGAAGTCTTCCAGAAAGAAGA TGAAGAAAGAAAGAGAAAAGAAGGGGAAGATCAGAGAAATGCTGCAGGCCGGGGTCCTAG TGATGGCGGAGGAGAGAAAGCTCAGGACCAATGTGCCGAGTATAAGGAAAAAATGAAAAA TGGAAAACTCAGCTGTACCCGAGAGAGGGATCCTGTGCGAGACGCTGACGGCAAATTGTT CAACAATAAGTGCATCATGTGTAAGGAGAAACTGCAAAAAGAAGCTGAGGGAAAAAATAA GCATTCCACCTACAGATCAAATGGGACTGAATCAGCATCAAGAAAGGATGTATGTGACGA GTTTAGAAGTCAAATGAAAAATGGGCAACTTATTTGCACCCGAGAAAGCGACCCTGTCCG AGGTCCAGACGGCAAGACACATGGAAATAAGTGTGCTATGTGTAAGGAGAAACTGGAAAG GGAAGCTGCTGAAAAAAAGAAAGAAGAGGGTGACAGGAGAAACACAAACAAAAATAATGA TGCAAAACAGGATCAGTGTCATGAATTCCGGAACATGGTGAAAGACGGAAAGCTTATCTG CACCAGAGAAAACAACCCTGTTCGAGGTCCAGATGGCAAGATGCACATCAACAAGTGTGC CATGTGTCAGAGCATCTTTGAGCG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-108, + strand, RNAz p=0.826083 | |
| 202-311, - strand, RNAz p=0.68815 | |
| 435-535, + strand, RNAz p=0.734085 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-108, + strand, RNAz p=0.826083 | |
| 202-311, - strand, RNAz p=0.68815 | |
| 435-535, + strand, RNAz p=0.734085 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr7 (41413294-41413401) | |
| 1-108, gnl|canFam2|chr2 (45188068-45188221) | |
| 1-108, gnl|dasNov1|scaffold_7699 (18383-18540) | |
| 1-108, gnl|echTel1|scaffold_276367 (47685-47840) | |
| 1-108, gnl|hg17|chr5 (147474099-147474252) | |
| 1-108, gnl|Hg17|chr5 (147474138-147474245) | |
| 1-108, gnl|loxAfr1|scaffold_23506 (44338-44490) | |
| 1-108, gnl|mm7|chr18 (44380664-44380817) | |
| 1-108, gnl|Mm7|chr18 (44380703-44380810) | |
| 1-108, gnl|monDom2|scaffold_6 (21024005-21024155) | |
| 1-108, gnl|oryCun1|scaffold_200932 (12398-12554) | |
| 1-108, gnl|panTro1|chr4 (154360663-154360816) | |
| 1-108, gnl|rheMac2|chr6 (144549125-144549278) | |
| 1-108, gnl|rn3|chr18 (37648700-37648852) | |
| 202-337, gnl|bosTau2|chr7 (41416472-41416607) | |
| 202-337, gnl|canFam2|chr2 (45191447-45191623) | |
| 202-337, gnl|dasNov1|scaffold_7699 (21713-21857) | |
| 202-337, gnl|echTel1|scaffold_276367 (52271-52448) | |
| 202-337, gnl|hg17|chr5 (147478180-147478357) | |
| 202-337, gnl|Hg17|chr5 (147478189-147478324) | |
| 202-337, gnl|loxAfr1|scaffold_20928 (43475-43300) | |
| 202-337, gnl|mm7|chr18 (44385104-44385281) | |
| 202-337, gnl|Mm7|chr18 (44385113-44385248) | |
| 202-337, gnl|monDom2|scaffold_6 (21026263-21026446) | |
| 202-337, gnl|oryCun1|scaffold_200932 (6643-6820) | |
| 202-337, gnl|panTro1|chr4 (154364741-154364918) | |
| 202-337, gnl|rheMac2|chr6 (144554226-144554403) | |
| 202-337, gnl|rn3|chr18 (37652215-37652392) | |
| 405-535, gnl|bosTau2|chr7 (41419198-41419328) | |
| 405-535, gnl|canFam2|chr2 (45195443-45195604) | |
| 405-535, gnl|dasNov1|scaffold_7699 (26738-26900) | |
| 405-535, gnl|echTel1|scaffold_276367 (56232-56391) | |
| 405-535, gnl|hg17|chr5 (147479749-147479910) | |
| 405-535, gnl|Hg17|chr5 (147479763-147479893) | |
| 405-535, gnl|loxAfr1|scaffold_20928 (43478-43322) | |
| 405-535, gnl|mm7|chr18 (44387381-44387542) | |
| 405-535, gnl|Mm7|chr18 (44387395-44387525) | |
| 405-535, gnl|monDom2|scaffold_6 (21029954-21030111) | |
| 405-535, gnl|oryCun1|scaffold_200932 (6640-6790) | |
| 405-535, gnl|panTro1|chr4 (154366310-154366471) | |
| 405-535, gnl|rheMac2|chr6 (144555772-144555933) | |
| 405-535, gnl|rn3|chr18 (37654440-37654598) | |
| 608-742, gnl|bosTau2|chr7 (41422294-41422429) | |
| 608-742, gnl|canFam2|chr2 (45199709-45199876) | |
| 608-742, gnl|dasNov1|scaffold_7699 (26738-26889) | |
| 608-742, gnl|echTel1|scaffold_280533 (1873-2039) | |
| 608-742, gnl|hg17|chr5 (147483573-147483739) | |
| 608-742, gnl|Hg17|chr5 (147483586-147483721) | |
| 608-742, gnl|loxAfr1|scaffold_20928 (40226-40060) | |
| 608-742, gnl|mm7|chr18 (44390315-44390480) | |
| 608-742, gnl|Mm7|chr18 (44390327-44390462) | |
| 608-742, gnl|monDom2|scaffold_6 (21037800-21037966) | |
| 608-742, gnl|oryCun1|scaffold_200932 (12401-12570) | |
| 608-742, gnl|panTro1|chr4 (154370362-154370528) | |
| 608-742, gnl|rheMac2|chr6 (144559196-144559367) | |
| 608-742, gnl|rn3|chr18 (37657797-37657962) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr7 (41413294-41413401) | |
| 1-108, gnl|canFam2|chr2 (45188068-45188221) | |
| 1-108, gnl|dasNov1|scaffold_7699 (18383-18540) | |
| 1-108, gnl|echTel1|scaffold_276367 (47685-47840) | |
| 1-108, gnl|hg17|chr5 (147474099-147474252) | |
| 1-108, gnl|Hg17|chr5 (147474138-147474245) | |
| 1-108, gnl|loxAfr1|scaffold_23506 (44338-44490) | |
| 1-108, gnl|mm7|chr18 (44380664-44380817) | |
| 1-108, gnl|Mm7|chr18 (44380703-44380810) | |
| 1-108, gnl|monDom2|scaffold_6 (21024005-21024155) | |
| 1-108, gnl|oryCun1|scaffold_200932 (12398-12554) | |
| 1-108, gnl|panTro1|chr4 (154360663-154360816) | |
| 1-108, gnl|rheMac2|chr6 (144549125-144549278) | |
| 1-108, gnl|rn3|chr18 (37648700-37648852) | |
| 202-337, gnl|bosTau2|chr7 (41416472-41416607) | |
| 202-337, gnl|canFam2|chr2 (45191447-45191623) | |
| 202-337, gnl|dasNov1|scaffold_7699 (21713-21857) | |
| 202-337, gnl|echTel1|scaffold_276367 (52271-52448) | |
| 202-337, gnl|hg17|chr5 (147478180-147478357) | |
| 202-337, gnl|Hg17|chr5 (147478189-147478324) | |
| 202-337, gnl|loxAfr1|scaffold_20928 (43475-43300) | |
| 202-337, gnl|mm7|chr18 (44385104-44385281) | |
| 202-337, gnl|Mm7|chr18 (44385113-44385248) | |
| 202-337, gnl|monDom2|scaffold_6 (21026263-21026446) | |
| 202-337, gnl|oryCun1|scaffold_200932 (6643-6820) | |
| 202-337, gnl|panTro1|chr4 (154364741-154364918) | |
| 202-337, gnl|rheMac2|chr6 (144554226-144554403) | |
| 202-337, gnl|rn3|chr18 (37652215-37652392) | |
| 405-535, gnl|bosTau2|chr7 (41419198-41419328) | |
| 405-535, gnl|canFam2|chr2 (45195443-45195604) | |
| 405-535, gnl|dasNov1|scaffold_7699 (26738-26900) | |
| 405-535, gnl|echTel1|scaffold_276367 (56232-56391) | |
| 405-535, gnl|hg17|chr5 (147479749-147479910) | |
| 405-535, gnl|Hg17|chr5 (147479763-147479893) | |
| 405-535, gnl|loxAfr1|scaffold_20928 (43478-43322) | |
| 405-535, gnl|mm7|chr18 (44387381-44387542) | |
| 405-535, gnl|Mm7|chr18 (44387395-44387525) | |
| 405-535, gnl|monDom2|scaffold_6 (21029954-21030111) | |
| 405-535, gnl|oryCun1|scaffold_200932 (6640-6790) | |
| 405-535, gnl|panTro1|chr4 (154366310-154366471) | |
| 405-535, gnl|rheMac2|chr6 (144555772-144555933) | |
| 405-535, gnl|rn3|chr18 (37654440-37654598) | |
| 608-742, gnl|bosTau2|chr7 (41422294-41422429) | |
| 608-742, gnl|canFam2|chr2 (45199709-45199876) | |
| 608-742, gnl|dasNov1|scaffold_7699 (26738-26889) | |
| 608-742, gnl|echTel1|scaffold_280533 (1873-2039) | |
| 608-742, gnl|hg17|chr5 (147483573-147483739) | |
| 608-742, gnl|Hg17|chr5 (147483586-147483721) | |
| 608-742, gnl|loxAfr1|scaffold_20928 (40226-40060) | |
| 608-742, gnl|mm7|chr18 (44390315-44390480) | |
| 608-742, gnl|Mm7|chr18 (44390327-44390462) | |
| 608-742, gnl|monDom2|scaffold_6 (21037800-21037966) | |
| 608-742, gnl|oryCun1|scaffold_200932 (12401-12570) | |
| 608-742, gnl|panTro1|chr4 (154370362-154370528) | |
| 608-742, gnl|rheMac2|chr6 (144559196-144559367) | |
| 608-742, gnl|rn3|chr18 (37657797-37657962) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ton (0.351) | |
| ski (0.146735) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ret (0.128733) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) | |
| ski (0.146735) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ret (0.128733) |