Ss1.1-Mixc-0031,h18.3
|
GGACTGAGTGCCAGGAAGGGGCGGCCACGAGGGGTATCGAGATCACCCCCCAGTCTCTCC
CGGAAGGGGAGCACCCAGCGAGTGCATGTGCTGCCGCTGCTACAGGCCCTGTCTGTCTTT
CCGTTTGTCTGTCTGTGTGTCTGTGACAGTCAGGGAAGGATGCCTCCAAGCTGGTGCGGG
ATGAGGCTGAGGGGGACAGGACAGGACATGGCATTGGTACGATGGAGGGGCCCAGAGGGC
CAGGGGGCTGTGGACAGGGAGCTCATGGGGCACTGACCATTCCAGAAGAGGGGGGCCTGG
GCACTGACCATTCCAGAAATGGGTTCCAAGTGGCACAATACTTTTTATTTCACGAGACAC
CACAAGCCAGAGGCCCCTGAGCCCTGTGCTGATGAGGAGGCCTGGCTGAGGCCTGGCCCC
GTGCAGGCTTAGGGCCCATCTGGGGCTTCCTTGTTCACTGTCAGGGCCAGGGGTGCTCTG
TCTGGGAATGAGGGAGTTAGCCAGGCTTGGCGCAGGAGTAGAGGCCTGTTGTAGTGGGTG
TGGACATATTCGGAAATATGTTTCTTAGCTCAAATAATAAAGTCCAGTTTGTACCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GGACTGAGTGCCAGGAAGGGGCGGCCACGAGGGGTATCGAGATCACCCCCCAGTCTCTCC
CGGAAGGGGAGCACCCAGCGAGTGCATGTGCTGCCGCTGCTACAGGCCCTGTCTGTCTTT
CCGTTTGTCTGTCTGTGTGTCTGTGACAGTCAGGGAAGGATGCCTCCAAGCTGGTGCGGG
ATGAGGCTGAGGGGGACAGGACAGGACATGGCATTGGTACGATGGAGGGGCCCAGAGGGC
CAGGGGGCTGTGGACAGGGAGCTCATGGGGCACTGACCATTCCAGAAGAGGGGGGCCTGG
GCACTGACCATTCCAGAAATGGGTTCCAAGTGGCACAATACTTTTTATTTCACGAGACAC
CACAAGCCAGAGGCCCCTGAGCCCTGTGCTGATGAGGAGGCCTGGCTGAGGCCTGGCCCC
GTGCAGGCTTAGGGCCCATCTGGGGCTTCCTTGTTCACTGTCAGGGCCAGGGGTGCTCTG
TCTGGGAATGAGGGAGTTAGCCAGGCTTGGCGCAGGAGTAGAGGCCTGTTGTAGTGGGTG
TGGACATATTCGGAAATATGTTTCTTAGCTCAAATAATAAAGTCCAGTTTGTACCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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367-452, - strand, RNAmicro p=0.989996 |
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374-459, + strand, RNAmicro p=0.967056 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
367-452, - strand, RNAmicro p=0.989996 |
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374-459, + strand, RNAmicro p=0.967056 |
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334-479, 965475 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK778318.1|),
blast E-value=8e-31, identity=88.59% |
|
334-479, BovGen_05181 normal cattle brain Bos taurus cDNA clone
(gb|CO876856.1|), blast E-value=2e-28, identity=87.92% |
|
334-479, BovGen_18940 normal cattle brain Bos taurus cDNA clone
(gb|CO890615.1|), blast E-value=5e-26, identity=87.25% |
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334-477, UMC-bmix_0B01-002-g11 Day 3 Corpus Luteum bmix Bos taurus cDNA 3',
(gb|CV982218.1|), blast E-value=3e-27, identity=87.76% |
|
334-479, 1463816 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT899163.1|),
blast E-value=5e-26, identity=87.25% |
|
334-479, LB03041.CR_O11 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374243.1|),
blast E-value=5e-26, identity=87.25% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
334-479, 965475 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK778318.1|),
blast E-value=8e-31, identity=88.59% |
|
334-479, BovGen_05181 normal cattle brain Bos taurus cDNA clone
(gb|CO876856.1|), blast E-value=2e-28, identity=87.92% |
|
334-479, BovGen_18940 normal cattle brain Bos taurus cDNA clone
(gb|CO890615.1|), blast E-value=5e-26, identity=87.25% |
|
334-477, UMC-bmix_0B01-002-g11 Day 3 Corpus Luteum bmix Bos taurus cDNA 3',
(gb|CV982218.1|), blast E-value=3e-27, identity=87.76% |
|
334-479, 1463816 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT899163.1|),
blast E-value=5e-26, identity=87.25% |
|
334-479, LB03041.CR_O11 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374243.1|),
blast E-value=5e-26, identity=87.25% |
Human gene identifier and UTR site,
human gene reading direction
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1-292, gnl|bosTau2|chr2 (64400251-64399957) |
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1-292, gnl|canFam2|chr37 (28976690-28977166) |
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1-292, gnl|echTel1|scaffold_294624 (3086-3529) |
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1-292, gnl|hg17|chr2 (220156350-220156809) |
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1-292, gnl|Hg17|chr2 (220156532-220156814) |
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1-292, gnl|loxAfr1|scaffold_168665 (4640-4169) |
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1-292, gnl|mm7|chr1 (75630037-75630515) |
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1-292, gnl|Mm7|chr1 (75630226-75630520) |
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1-292, gnl|monDom2|scaffold_39 (1103346-1102790) |
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1-292, gnl|oryCun1|scaffold_209811 (42064-42528) |
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1-292, gnl|panTro1|chr13 (110320952-110321411) |
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1-292, gnl|rheMac2|chr12 (83314478-83314937) |
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1-292, gnl|rn3|chr9 (74828264-74828748) |
| |
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299-597, gnl|bosTau2|chr2 (64399981-64399685) |
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299-597, gnl|Hg17|chr2 (220156790-220157089) |
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299-597, gnl|Mm7|chr1 (75630492-75630758) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-292, gnl|bosTau2|chr2 (64400251-64399957) |
|
1-292, gnl|canFam2|chr37 (28976690-28977166) |
|
1-292, gnl|echTel1|scaffold_294624 (3086-3529) |
|
1-292, gnl|hg17|chr2 (220156350-220156809) |
|
1-292, gnl|Hg17|chr2 (220156532-220156814) |
|
1-292, gnl|loxAfr1|scaffold_168665 (4640-4169) |
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1-292, gnl|mm7|chr1 (75630037-75630515) |
|
1-292, gnl|Mm7|chr1 (75630226-75630520) |
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1-292, gnl|monDom2|scaffold_39 (1103346-1102790) |
|
1-292, gnl|oryCun1|scaffold_209811 (42064-42528) |
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1-292, gnl|panTro1|chr13 (110320952-110321411) |
|
1-292, gnl|rheMac2|chr12 (83314478-83314937) |
|
1-292, gnl|rn3|chr9 (74828264-74828748) |
| |
|
299-597, gnl|bosTau2|chr2 (64399981-64399685) |
|
299-597, gnl|Hg17|chr2 (220156790-220157089) |
|
299-597, gnl|Mm7|chr1 (75630492-75630758) |
|
nmm (0.265604) |
|
fhi (0.169578) |
|
nmm (0.265604) |
|
fhi (0.169578) |
