Non-Coding RNA Search

Ss1.1-Mixc-0031b11.5

Sequence:


               
               GAGGGGGCTTGCATAGGAGTGCAGACTGAAGGCATCAGAGGAAGGACTGGCTGAGGGGCT
GTCCTCTGATGGGAATTTGGGGACATACTTGGTCTTGTCCTCTCCCGCACAGCACAGGTT
CCAGCACTGGCTTTGGAAGAAAAAAATACCCTGTCCAGAGGGAAAGCCAGAAAAGAATGG
GAAGTGGGTGGCCAGGAGAGAAGGCCTGATAGGAGCCCTCAGACAGTTTGGGGCCTAGTT
GAGCTGCTCCTGGGCCCGTGGGGAAGGCGGGGACCACAGTATTCCAGCCCAAAGACTAGG
GGAGCATTCATTACCTTGGCTTGGCCTGGAAATCCGTAGGGCAGGGCCCACCACGTTCCA
AAGAAATAAAAACAAAATTATTTTTAACAAATGGAGGCAGTTTAAACTTGCTTAGATATT
CTGTGTGGAAGATGGGAACAGTAAATAGATCTCATGCCAAATGGGATAAAGACCCCACTC
TCACATAGCTTGGGTAGGTTGGGCAGAGGCCAGAGAATAAGGGTAGGACCCAGAGCAAAG
CCAAGTGGGGCTTTGGGGAAGGTACTTTGTGGGGTAAAAACATTGGAGCCACCAAGTCTA
GTTTAAAAATAGTCCCATCTGTTCTGGTTTCTATCTGCATATACTATTCCCAGGTTGCCT
TAGTAACCAGGGCTTCTAGGGTCATTTAGGGGGGGCAAGTACTAAGGAGGGTGAATTTGC
TGGGAAATGGGAATGGGGTATGTATTGACAGAGCCTTCCCTTATTCAAACAGAGCAGGGC
AGGTGGCAGTTGCTTCCTGAGTTN------------AATATCCCTCCTACCCCATCCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGGGCTTGCATAGGAGTGCAGACTGAAGGCATCAGAGGAAGGACTGGCTGAGGGGCT
GTCCTCTGATGGGAATTTGGGGACATACTTGGTCTTGTCCTCTCCCGCACAGCACAGGTT
CCAGCACTGGCTTTGGAAGAAAAAAATACCCTGTCCAGAGGGAAAGCCAGAAAAGAATGG
GAAGTGGGTGGCCAGGAGAGAAGGCCTGATAGGAGCCCTCAGACAGTTTGGGGCCTAGTT
GAGCTGCTCCTGGGCCCGTGGGGAAGGCGGGGACCACAGTATTCCAGCCCAAAGACTAGG
GGAGCATTCATTACCTTGGCTTGGCCTGGAAATCCGTAGGGCAGGGCCCACCACGTTCCA
AAGAAATAAAAACAAAATTATTTTTAACAAATGGAGGCAGTTTAAACTTGCTTAGATATT
CTGTGTGGAAGATGGGAACAGTAAATAGATCTCATGCCAAATGGGATAAAGACCCCACTC
TCACATAGCTTGGGTAGGTTGGGCAGAGGCCAGAGAATAAGGGTAGGACCCAGAGCAAAG
CCAAGTGGGGCTTTGGGGAAGGTACTTTGTGGGGTAAAAACATTGGAGCCACCAAGTCTA
GTTTAAAAATAGTCCCATCTGTTCTGGTTTCTATCTGCATATACTATTCCCAGGTTGCCT
TAGTAACCAGGGCTTCTAGGGTCATTTAGGGGGGGCAAGTACTAAGGAGGGTGAATTTGC
TGGGAAATGGGAATGGGGTATGTATTGACAGAGCCTTCCCTTATTCAAACAGAGCAGGGC
AGGTGGCAGTTGCTTCCTGAGTTN------------AATATCCCTCCTACCCCATCCCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               116-367, - strand, RNAz p=0.96589
               

               
               448-564, + strand, RNAz p=0.586954

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-367, - strand, RNAz p=0.96589
               

               
               448-564, + strand, RNAz p=0.586954

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-828, gnl|bosTau2|chr5 (33494515-33493663)
               

               
               5-828, gnl|Hg17|chr12 (54802138-54803016)
               

               
               5-828, gnl|Mm7|chr10 (128045719-128044898)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-828, gnl|bosTau2|chr5 (33494515-33493663)
               

               
               5-828, gnl|Hg17|chr12 (54802138-54803016)
               

               
               5-828, gnl|Mm7|chr10 (128045719-128044898)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nje (0.16592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	116-367, - strand, RNAz p=0.96589
	448-564, + strand, RNAz p=0.586954

	5-828, gnl\|bosTau2\|chr5 (33494515-33493663)
	5-828, gnl\|Hg17\|chr12 (54802138-54803016)
	5-828, gnl\|Mm7\|chr10 (128045719-128044898)