Non-Coding RNA Search

Ss1.1-Mixc-0031b18.3

Sequence:


               
               GAGTGAGATGCATTTTGTAAATGAGGAGCTGGTGACCCTTGGTGAGACCCCTGAGGGTCC
CTGAGGCCTGACCGACCAGCCACAGCGCCCCCAACCTGTGGGCGCCTGCCTTGCAGTGGC
TGCGGCCAGTGAGGCTTTGGGCTCAGGTCCTGAGAAGAGGAGGGAGAACCAATTTTGAGT
CTTGGGGCCCGGGCCGCCCCCAGGGCACAGCGAGCAGCCAGCAGGGAGATGATGTGTGTG
GGGGAGGAGGAGGGTGGAGTGAGGTCCCCAGGGAGCAGGATTCCTATTTGGAGCACAAAG
TGGGATAAAGCACAGGAGACGGGGGGTTGGGATTAGTCACCCCCCCCCTCCCCTCACCGA
GGAAGCACAGAAAGAAGGAGCCATTGAAGGGGCAGAACCTCCTAGACCCTGCGGCCTGGT
GCTTGAGAGCCAGGGGGAGCTATTGAGGGTTGGGGAGGGAGGGGGAGCCGGGTTGTGTTT
CTTCATTTCTTTCTTTTTTGTTGTTGTTTTTGTTGGTTCATCCTTGTTTTCTAGCTTTGG
ATCATTTTTGTACAAAGGCAAGCAAGCCTTTTTGAAAAATAACAAAAGAGGAAAAAAAAA
ATCCCTCCTGAAAAAAAAAAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGAGATGCATTTTGTAAATGAGGAGCTGGTGACCCTTGGTGAGACCCCTGAGGGTCC
CTGAGGCCTGACCGACCAGCCACAGCGCCCCCAACCTGTGGGCGCCTGCCTTGCAGTGGC
TGCGGCCAGTGAGGCTTTGGGCTCAGGTCCTGAGAAGAGGAGGGAGAACCAATTTTGAGT
CTTGGGGCCCGGGCCGCCCCCAGGGCACAGCGAGCAGCCAGCAGGGAGATGATGTGTGTG
GGGGAGGAGGAGGGTGGAGTGAGGTCCCCAGGGAGCAGGATTCCTATTTGGAGCACAAAG
TGGGATAAAGCACAGGAGACGGGGGGTTGGGATTAGTCACCCCCCCCCTCCCCTCACCGA
GGAAGCACAGAAAGAAGGAGCCATTGAAGGGGCAGAACCTCCTAGACCCTGCGGCCTGGT
GCTTGAGAGCCAGGGGGAGCTATTGAGGGTTGGGGAGGGAGGGGGAGCCGGGTTGTGTTT
CTTCATTTCTTTCTTTTTTGTTGTTGTTTTTGTTGGTTCATCCTTGTTTTCTAGCTTTGG
ATCATTTTTGTACAAAGGCAAGCAAGCCTTTTTGAAAAATAACAAAAGAGGAAAAAAAAA
ATCCCTCCTGAAAAAAAAAAAACC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               241-359, + strand, RNAz p=0.829422
               

               
               246-354, - strand, RNAz p=0.995862
               

               
               499-624, - strand, RNAz p=0.875809

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-359, + strand, RNAz p=0.829422
               

               
               246-354, - strand, RNAz p=0.995862
               

               
               499-624, - strand, RNAz p=0.875809

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_025248, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025248, +

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               19-624, gnl|bosTau2|chr19 (33435070-33435664)
               

               
               19-624, gnl|canFam2|chr9 (26992536-26991961)
               

               
               19-624, gnl|echTel1|scaffold_293881 (617-1175)
               

               
               19-624, gnl|hg17|chr17 (33941262-33941831)
               

               
               19-624, gnl|Hg17|chr17 (33941933-33941335)
               

               
               19-624, gnl|loxAfr1|scaffold_28007 (867-1457)
               

               
               19-624, gnl|mm7|chr11 (97619804-97620370)
               

               
               19-624, gnl|Mm7|chr11 (97620460-97619877)
               

               
               19-624, gnl|monDom2|scaffold_18 (47385246-47385819)
               

               
               19-624, gnl|panTro1|chr19 (37156609-37157170)
               

               
               19-624, gnl|rheMac2|chr16 (48549447-48550017)
               

               
               19-624, gnl|rn3|chr10 (86270863-86271456)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-624, gnl|bosTau2|chr19 (33435070-33435664)
               

               
               19-624, gnl|canFam2|chr9 (26992536-26991961)
               

               
               19-624, gnl|echTel1|scaffold_293881 (617-1175)
               

               
               19-624, gnl|hg17|chr17 (33941262-33941831)
               

               
               19-624, gnl|Hg17|chr17 (33941933-33941335)
               

               
               19-624, gnl|loxAfr1|scaffold_28007 (867-1457)
               

               
               19-624, gnl|mm7|chr11 (97619804-97620370)
               

               
               19-624, gnl|Mm7|chr11 (97620460-97619877)
               

               
               19-624, gnl|monDom2|scaffold_18 (47385246-47385819)
               

               
               19-624, gnl|panTro1|chr19 (37156609-37157170)
               

               
               19-624, gnl|rheMac2|chr16 (48549447-48550017)
               

               
               19-624, gnl|rn3|chr10 (86270863-86271456)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               hyp (0.42851)
               

               
               nep (0.183925)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               nep (0.183925)

	241-359, + strand, RNAz p=0.829422
	246-354, - strand, RNAz p=0.995862
	499-624, - strand, RNAz p=0.875809

	19-624, gnl\|bosTau2\|chr19 (33435070-33435664)
	19-624, gnl\|canFam2\|chr9 (26992536-26991961)
	19-624, gnl\|echTel1\|scaffold_293881 (617-1175)
	19-624, gnl\|hg17\|chr17 (33941262-33941831)
	19-624, gnl\|Hg17\|chr17 (33941933-33941335)
	19-624, gnl\|loxAfr1\|scaffold_28007 (867-1457)
	19-624, gnl\|mm7\|chr11 (97619804-97620370)
	19-624, gnl\|Mm7\|chr11 (97620460-97619877)
	19-624, gnl\|monDom2\|scaffold_18 (47385246-47385819)
	19-624, gnl\|panTro1\|chr19 (37156609-37157170)
	19-624, gnl\|rheMac2\|chr16 (48549447-48550017)
	19-624, gnl\|rn3\|chr10 (86270863-86271456)