Ss1.1-Mixc-0031n19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGAGGAGGGCGGTGAGGGAGGCGCTGACCTGGAAGCGTTCTGGCGACCTGGCGGCGG CGTGGCCCGCGCGCTGGTGAGTGGAGGCGCCGGCCGGCGGGCACCATGGTCTTCCTGACT GTGCCCCTCTGGCTGCGGAGCCGCGTCACCGACCGCTACTGGCGGGTCCAGGAGGTGCTG AAACACGCGCGGCACTTCCGGGGAAGGAAGAATCGGTGCTACCGGCTGGCCGTCAGGGCT GTGACGAGAGCGTTCGTGAAGTGCACGCGGGCCCGCAGGCTGAAGAAGAGGAGTCTGCGG ACGCTCTGGATTAATCGGATTACAGCTGCCTCCCAGGAACACGGCCTGAAGTACCCAGCG TTTATCATCAATTTGATTAAGTGCCAGGTGGAGCTCAACAGGAAGGTACTTGCAGATCTA GCCATCTATGAACCAAAGACTTTTAAATCTTTGGCTGCTTTAGCCAAAAGGAGGCGAGAA GAAGGATTTGCTGCAGCCTTGGGGGACGGGAAGGAGCCTGACGGCATTTTTTCCAGGGTG GTCCAGCACCGCTGATGGGGAGGCTGACATCGACTGCCCTCTGCAGCGGAGCATCTTGGG AAAAGGCTTCCCCTGTGATGATTGTACTGCTGTTTGTAAGTTTGACTTGCCTTTGTGTTA AATTTATATTTCAGTAACAGGCCTGAGTGGTGCCGGTTCAGAACTGTCTCGTATGCATTG TACAAGTAAAGGTTATGTGGGGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGAGGAGGGCGGTGAGGGAGGCGCTGACCTGGAAGCGTTCTGGCGACCTGGCGGCGG CGTGGCCCGCGCGCTGGTGAGTGGAGGCGCCGGCCGGCGGGCACCATGGTCTTCCTGACT GTGCCCCTCTGGCTGCGGAGCCGCGTCACCGACCGCTACTGGCGGGTCCAGGAGGTGCTG AAACACGCGCGGCACTTCCGGGGAAGGAAGAATCGGTGCTACCGGCTGGCCGTCAGGGCT GTGACGAGAGCGTTCGTGAAGTGCACGCGGGCCCGCAGGCTGAAGAAGAGGAGTCTGCGG ACGCTCTGGATTAATCGGATTACAGCTGCCTCCCAGGAACACGGCCTGAAGTACCCAGCG TTTATCATCAATTTGATTAAGTGCCAGGTGGAGCTCAACAGGAAGGTACTTGCAGATCTA GCCATCTATGAACCAAAGACTTTTAAATCTTTGGCTGCTTTAGCCAAAAGGAGGCGAGAA GAAGGATTTGCTGCAGCCTTGGGGGACGGGAAGGAGCCTGACGGCATTTTTTCCAGGGTG GTCCAGCACCGCTGATGGGGAGGCTGACATCGACTGCCCTCTGCAGCGGAGCATCTTGGG AAAAGGCTTCCCCTGTGATGATTGTACTGCTGTTTGTAAGTTTGACTTGCCTTTGTGTTA AATTTATATTTCAGTAACAGGCCTGAGTGGTGCCGGTTCAGAACTGTCTCGTATGCATTG TACAAGTAAAGGTTATGTGGGGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 380-618, + strand, RNAz p=0.963229 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 380-618, + strand, RNAz p=0.963229 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_017971, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 192-303, gnl|bosTau2|chr16 (37851377-37851488) | |
| 192-303, gnl|canFam2|chr5 (59558798-59558938) | |
| 192-303, gnl|canFam2|chr5 (59558798-59558938) | |
| 192-303, gnl|dasNov1|scaffold_50652 (7337-7476) | |
| 192-303, gnl|dasNov1|scaffold_50652 (7337-7476) | |
| 192-303, gnl|echTel1|scaffold_129899 (1000-861) | |
| 192-303, gnl|echTel1|scaffold_129899 (1000-861) | |
| 192-303, gnl|fr1|chrUn (46224007-46224162) | |
| 192-303, gnl|fr1|chrUn (46224007-46224162) | |
| 192-303, gnl|galGal2|chr21 (2109650-2109520) | |
| 192-303, gnl|galGal2|chr21 (2109650-2109520) | |
| 192-303, gnl|hg17|chr1 (1427543-1427683) | |
| 192-303, gnl|Hg17|chr1 (1427667-1427556) | |
| 192-303, gnl|hg17|chr1_random (311743-311883) | |
| 192-303, gnl|loxAfr1|scaffold_16891 (37384-37523) | |
| 192-303, gnl|loxAfr1|scaffold_16891 (37384-37523) | |
| 192-303, gnl|mm7|chr4 (154793500-154793362) | |
| 192-303, gnl|mm7|chr4 (154793500-154793362) | |
| 192-303, gnl|Mm7|chr4 (154793374-154793485) | |
| 192-303, gnl|monDom2|scaffold_196 (263030-263157) | |
| 192-303, gnl|monDom2|scaffold_196 (263030-263157) | |
| 192-303, gnl|oryCun1|scaffold_212895 (83262-83147) | |
| 192-303, gnl|oryCun1|scaffold_212895 (83262-83147) | |
| 192-303, gnl|panTro1|chr1 (1324900-1325040) | |
| 192-303, gnl|panTro1|chr1 (1324900-1325040) | |
| 192-303, gnl|rheMac2|chr1 (4483330-4483470) | |
| 192-303, gnl|rheMac2|chr1 (4483330-4483470) | |
| 192-303, gnl|rn3|chr5 (172668852-172668706) | |
| 192-303, gnl|rn3|chr5 (172668852-172668706) | |
| 192-303, gnl|tetNig1|chr11 (5793502-5793351) | |
| 192-303, gnl|tetNig1|chr11 (5793502-5793351) | |
| 192-303, gnl|xenTro1|scaffold_414 (272761-272632) | |
| 192-303, gnl|xenTro1|scaffold_414 (272761-272632) | |
| 380-683, gnl|bosTau2|chr16 (37853810-37854118) | |
| 380-683, gnl|Hg17|chr1 (1422905-1422638) | |
| 380-683, gnl|Mm7|chr4 (154798019-154798291) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 192-303, gnl|bosTau2|chr16 (37851377-37851488) | |
| 192-303, gnl|canFam2|chr5 (59558798-59558938) | |
| 192-303, gnl|canFam2|chr5 (59558798-59558938) | |
| 192-303, gnl|dasNov1|scaffold_50652 (7337-7476) | |
| 192-303, gnl|dasNov1|scaffold_50652 (7337-7476) | |
| 192-303, gnl|echTel1|scaffold_129899 (1000-861) | |
| 192-303, gnl|echTel1|scaffold_129899 (1000-861) | |
| 192-303, gnl|fr1|chrUn (46224007-46224162) | |
| 192-303, gnl|fr1|chrUn (46224007-46224162) | |
| 192-303, gnl|galGal2|chr21 (2109650-2109520) | |
| 192-303, gnl|galGal2|chr21 (2109650-2109520) | |
| 192-303, gnl|hg17|chr1 (1427543-1427683) | |
| 192-303, gnl|Hg17|chr1 (1427667-1427556) | |
| 192-303, gnl|hg17|chr1_random (311743-311883) | |
| 192-303, gnl|loxAfr1|scaffold_16891 (37384-37523) | |
| 192-303, gnl|loxAfr1|scaffold_16891 (37384-37523) | |
| 192-303, gnl|mm7|chr4 (154793500-154793362) | |
| 192-303, gnl|mm7|chr4 (154793500-154793362) | |
| 192-303, gnl|Mm7|chr4 (154793374-154793485) | |
| 192-303, gnl|monDom2|scaffold_196 (263030-263157) | |
| 192-303, gnl|monDom2|scaffold_196 (263030-263157) | |
| 192-303, gnl|oryCun1|scaffold_212895 (83262-83147) | |
| 192-303, gnl|oryCun1|scaffold_212895 (83262-83147) | |
| 192-303, gnl|panTro1|chr1 (1324900-1325040) | |
| 192-303, gnl|panTro1|chr1 (1324900-1325040) | |
| 192-303, gnl|rheMac2|chr1 (4483330-4483470) | |
| 192-303, gnl|rheMac2|chr1 (4483330-4483470) | |
| 192-303, gnl|rn3|chr5 (172668852-172668706) | |
| 192-303, gnl|rn3|chr5 (172668852-172668706) | |
| 192-303, gnl|tetNig1|chr11 (5793502-5793351) | |
| 192-303, gnl|tetNig1|chr11 (5793502-5793351) | |
| 192-303, gnl|xenTro1|scaffold_414 (272761-272632) | |
| 192-303, gnl|xenTro1|scaffold_414 (272761-272632) | |
| 380-683, gnl|bosTau2|chr16 (37853810-37854118) | |
| 380-683, gnl|Hg17|chr1 (1422905-1422638) | |
| 380-683, gnl|Mm7|chr4 (154798019-154798291) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| cje (0.991408) | |
| cmu (0.55918) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| ski (0.440205) | |
| cst (0.420109) | |
| hea (0.408998) | |
| ste (0.405625) | |
| eru (0.360144) | |
| sme (0.305437) | |
| cte (0.29274) | |
| csk (0.281492) | |
| cga (0.279096) | |
| clu (0.239292) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.991408) | |
| cmu (0.55918) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| ski (0.440205) | |
| cst (0.420109) | |
| hea (0.408998) | |
| ste (0.405625) | |
| eru (0.360144) | |
| sme (0.305437) | |
| cte (0.29274) | |
| csk (0.281492) | |
| cga (0.279096) | |
| clu (0.239292) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| ldo (0.0970026) |