Non-Coding RNA Search

Ss1.1-Mixc-0031o23.3

Sequence:


               
               CCCGGCCCGGCCCGGCCCGGCCCGGCGTCGAGAGCTGCCTGAAGTCGTCGGCCTGAATCT
GAGGGATAACAATCTGCTGTGCCTTTGCAGCCTCTGCTTAGCCCAAAGTAACAGTACTTT
TGATAATAACTTCACTATGTGGGGTACTCCTGAGTAAGCCAGTCTCAGACGTTTGGGGTT
TTCCTCCTCTTCGCTTTCTTACTCTTTGGACCCGTGGTTGTCGCCAAACTTGGGTATTCA
TGGAATTTCTAGTTAATGAAATACCTATACTTTGATACTGAAGACTGCCAAATACATAGG
AATTTTCTTTCATAAAAACCAGTCGTGGAGACTGTCCCTGCCCAGCACTGAATGTTGTGC
GAGCCCCGGGTGCTCGCCCTGCGCCTCCGGGGAGCGGAGCGCGTTGGAGCCGCGGAGGGT
CGGGGGAGCCTCGGAAGCACTTGCAGCGGACGTTGCAGTCTTCGGTTTCAGTAACTTCAC
AGGTCCGTCGTTTTCGGAGAGGTTTTTAATAGTTCTCTGTCCACTTTTTATAAGCTTTAA
AATGATTTTCTCTGCCTTGAGACGCGCGTCAAGAAAAAGCACCTCTCCCGCCTCCGAGAG
CGTCGAAGACGAGCCAGGCGCGCGTTGCGGGCTCTGCCAAGTGTCTCCGGGTCCACGTCG
GGTGGCGCCGCCCTGGCGCTGACAAGAAGAGCAGTTGCCGCGTTGCATCGGGATGGACTT
TCAGAGAACGTGGCGTTCAGCCTTCGAGGGTAGTTCACGTTTGCCACCATGATGTTCTTT
TTTACGTCAAAGGACTGCGACCTTGGAGACATGGACATGCGGAGTCTTTTATCATTATTA
GCTCATGTATTTGAGGAAGAGCAGCTGTCTTTTTATATGTTTTTTGACAAATCATATTGT
AATTCTTTTGTACAAAAAAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGCCCGGCCCGGCCCGGCCCGGCGTCGAGAGCTGCCTGAAGTCGTCGGCCTGAATCT
GAGGGATAACAATCTGCTGTGCCTTTGCAGCCTCTGCTTAGCCCAAAGTAACAGTACTTT
TGATAATAACTTCACTATGTGGGGTACTCCTGAGTAAGCCAGTCTCAGACGTTTGGGGTT
TTCCTCCTCTTCGCTTTCTTACTCTTTGGACCCGTGGTTGTCGCCAAACTTGGGTATTCA
TGGAATTTCTAGTTAATGAAATACCTATACTTTGATACTGAAGACTGCCAAATACATAGG
AATTTTCTTTCATAAAAACCAGTCGTGGAGACTGTCCCTGCCCAGCACTGAATGTTGTGC
GAGCCCCGGGTGCTCGCCCTGCGCCTCCGGGGAGCGGAGCGCGTTGGAGCCGCGGAGGGT
CGGGGGAGCCTCGGAAGCACTTGCAGCGGACGTTGCAGTCTTCGGTTTCAGTAACTTCAC
AGGTCCGTCGTTTTCGGAGAGGTTTTTAATAGTTCTCTGTCCACTTTTTATAAGCTTTAA
AATGATTTTCTCTGCCTTGAGACGCGCGTCAAGAAAAAGCACCTCTCCCGCCTCCGAGAG
CGTCGAAGACGAGCCAGGCGCGCGTTGCGGGCTCTGCCAAGTGTCTCCGGGTCCACGTCG
GGTGGCGCCGCCCTGGCGCTGACAAGAAGAGCAGTTGCCGCGTTGCATCGGGATGGACTT
TCAGAGAACGTGGCGTTCAGCCTTCGAGGGTAGTTCACGTTTGCCACCATGATGTTCTTT
TTTACGTCAAAGGACTGCGACCTTGGAGACATGGACATGCGGAGTCTTTTATCATTATTA
GCTCATGTATTTGAGGAAGAGCAGCTGTCTTTTTATATGTTTTTTGACAAATCATATTGT
AATTCTTTTGTACAAAAAAGAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37181638|gb|AAQ88628.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37181638|gb|AAQ88628.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               489-607, - strand, RNAz p=0.688197

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               489-607, - strand, RNAz p=0.688197

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-924, gnl|bosTau2|chr12 (14923608-14924511)
               

               
               19-924, gnl|Hg17|chr13 (27765668-27766558)
               

               
               19-924, gnl|Mm7|chr5 (146441083-146441932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-924, gnl|bosTau2|chr12 (14923608-14924511)
               

               
               19-924, gnl|Hg17|chr13 (27765668-27766558)
               

               
               19-924, gnl|Mm7|chr5 (146441083-146441932)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sin (0.174948)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	19-924, gnl\|bosTau2\|chr12 (14923608-14924511)
	19-924, gnl\|Hg17\|chr13 (27765668-27766558)
	19-924, gnl\|Mm7\|chr5 (146441083-146441932)

	sin (0.174948)
	spl (0.143184)
	nmm (0.132802)
	cly (0.120642)
	cty (0.10408)