Non-Coding RNA Search

Ss1.1-Mixc-0032,a06.3

Sequence:


               
               ATACCAGTTCTCCCGCCCGGGTCCCCAGTCCGTGCCTCTGCAGCTGAGTGCCCACTGGCA
GTGCGGGGCCACCCTCACTCAGGTCTCAGTGGAGTACAGCTACCGGCCCGGTGCCACGGC
CGTGCCCACGCCACTCACCAATGTCCAAATCGTGCTGCCCATTGGGGAGCCTGTGACCAA
TGTCCGTCTGCAGCCGGCTGCCACCTGGAACCTGGAAGAGAAGAGGCTCCTATGGAAGCT
TCCAGATGTGTCCGAGGCAGGGGGTTCTGGCCGCCTATCTGCCAGTTGGGAGCCATGTTC
GGGGCCCAGCACGCCCAGCCCTGTAGCCGCTCAGTTCACCAGCGAGGGGGCCACTCTATC
TGGTGTGGACCTGGAGCTGGTGGGGAGTGGCTACCGCATGTCCTTGATAAAGAAGAGGTT
CGCCACAGGGATGTACCTAGTGAGCTGCTGATCCTGCAGAGGCCAACCAGCACCGCTGGC
CCCAGCTCTGTGCTGCATCCTGGTGCTCGCTGACTGCTCCCTGCCCTCCTGCTGGACCCA
GGGGTCCCCCACTCGGCCTCCCCTGAGGCCCCCACTCCATGGAGAAAGTCCCTATGCTCA
GTCCTGCTGAGCCTGAGATTCACTTTTGTTCATATCAACTCCCATGAAGGTCCTTGGACT
TTTAATGTTCTTTGAATAAACACTCTATTTTCTAATAAATAAAAAATGAGCCTTTTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCAGTTCTCCCGCCCGGGTCCCCAGTCCGTGCCTCTGCAGCTGAGTGCCCACTGGCA
GTGCGGGGCCACCCTCACTCAGGTCTCAGTGGAGTACAGCTACCGGCCCGGTGCCACGGC
CGTGCCCACGCCACTCACCAATGTCCAAATCGTGCTGCCCATTGGGGAGCCTGTGACCAA
TGTCCGTCTGCAGCCGGCTGCCACCTGGAACCTGGAAGAGAAGAGGCTCCTATGGAAGCT
TCCAGATGTGTCCGAGGCAGGGGGTTCTGGCCGCCTATCTGCCAGTTGGGAGCCATGTTC
GGGGCCCAGCACGCCCAGCCCTGTAGCCGCTCAGTTCACCAGCGAGGGGGCCACTCTATC
TGGTGTGGACCTGGAGCTGGTGGGGAGTGGCTACCGCATGTCCTTGATAAAGAAGAGGTT
CGCCACAGGGATGTACCTAGTGAGCTGCTGATCCTGCAGAGGCCAACCAGCACCGCTGGC
CCCAGCTCTGTGCTGCATCCTGGTGCTCGCTGACTGCTCCCTGCCCTCCTGCTGGACCCA
GGGGTCCCCCACTCGGCCTCCCCTGAGGCCCCCACTCCATGGAGAAAGTCCCTATGCTCA
GTCCTGCTGAGCCTGAGATTCACTTTTGTTCATATCAACTCCCATGAAGGTCCTTGGACT
TTTAATGTTCTTTGAATAAACACTCTATTTTCTAATAAATAAAAAATGAGCCTTTTCCTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               6-208, gnl|bosTau2|chr7 (4625050-4624848)
               

               
               6-208, gnl|Hg17|chr19 (17756532-17756734)
               

               
               6-208, gnl|Mm7|chr8 (70177089-70176887)
               


               
               263-429, gnl|bosTau2|chr7 (4623413-4623247)
               

               
               263-429, gnl|Hg17|chr19 (17759490-17759656)
               

               
               263-429, gnl|Mm7|chr8 (70176404-70176238)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-208, gnl|bosTau2|chr7 (4625050-4624848)
               

               
               6-208, gnl|Hg17|chr19 (17756532-17756734)
               

               
               6-208, gnl|Mm7|chr8 (70177089-70176887)
               


               
               263-429, gnl|bosTau2|chr7 (4623413-4623247)
               

               
               263-429, gnl|Hg17|chr19 (17759490-17759656)
               

               
               263-429, gnl|Mm7|chr8 (70176404-70176238)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.39557)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               cly (0.120642)

	6-208, gnl\|bosTau2\|chr7 (4625050-4624848)
	6-208, gnl\|Hg17\|chr19 (17756532-17756734)
	6-208, gnl\|Mm7\|chr8 (70177089-70176887)

	263-429, gnl\|bosTau2\|chr7 (4623413-4623247)
	263-429, gnl\|Hg17\|chr19 (17759490-17759656)
	263-429, gnl\|Mm7\|chr8 (70176404-70176238)