Non-Coding RNA Search

Ss1.1-Mixc-0032,d18.3

Sequence:


               
               CACAGCCACAGTAAAGCGGGATCCAGGCTTCCATCTTCAACCTACACCGCAGCTCAGGGC
AATGCTGGATCCTTAACCCATTGATCGGGGATCGAACCTGCATCCTCATGGATCCTAGTC
AGGTTTCTTAACCACTGAGCCACAAAGGGAACTCTCTTAAGTTGTATTTACTCATAAAAG
TTACCTAAGTGATTACAGAAGAATTTCCAGTAGACACACAAACTAATCTTTGTGTGGTTA
AAGAAGTTCTTTTTACTAATCTTAATCCTTTTTTTTTAATTACTTTTATTCTTAATGAAT
AAACAAACCACCCCTATGATTAAAGTTAAAAACGCTCATCACTTAAGTGTTGAAAAAACT
ATCTTTCCCTTAGGAGGAATTGTTTTTAAATAGTTATAGTAATCTGTAAAAATGAATGGT
ATAAAGGCAAACATGAGTGCTATATCTGCAAACAAAAGAAGAGTCAGATACTGGGCTTCT
AAATTCTCTTCTTGATAGCTTCCCCCTCACCTTGTCCCAGGCGCTCTTGGTGTACAGTTA
GGGAAATGGTAAAAGCATTAGAGAAAGTTAACGTTTTAGGAACACTTCTTCAGAAAAAAA
AAAAAATAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGCCACAGTAAAGCGGGATCCAGGCTTCCATCTTCAACCTACACCGCAGCTCAGGGC
AATGCTGGATCCTTAACCCATTGATCGGGGATCGAACCTGCATCCTCATGGATCCTAGTC
AGGTTTCTTAACCACTGAGCCACAAAGGGAACTCTCTTAAGTTGTATTTACTCATAAAAG
TTACCTAAGTGATTACAGAAGAATTTCCAGTAGACACACAAACTAATCTTTGTGTGGTTA
AAGAAGTTCTTTTTACTAATCTTAATCCTTTTTTTTTAATTACTTTTATTCTTAATGAAT
AAACAAACCACCCCTATGATTAAAGTTAAAAACGCTCATCACTTAAGTGTTGAAAAAACT
ATCTTTCCCTTAGGAGGAATTGTTTTTAAATAGTTATAGTAATCTGTAAAAATGAATGGT
ATAAAGGCAAACATGAGTGCTATATCTGCAAACAAAAGAAGAGTCAGATACTGGGCTTCT
AAATTCTCTTCTTGATAGCTTCCCCCTCACCTTGTCCCAGGCGCTCTTGGTGTACAGTTA
GGGAAATGGTAAAAGCATTAGAGAAAGTTAACGTTTTAGGAACACTTCTTCAGAAAAAAA
AAAAAATAACAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               186-610, gnl|bosTau2|chr11 (31152553-31152123)
               

               
               186-610, gnl|Hg17|chr18 (6904439-6904816)
               

               
               186-610, gnl|Mm7|chr17 (66115079-66114715)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-610, gnl|bosTau2|chr11 (31152553-31152123)
               

               
               186-610, gnl|Hg17|chr18 (6904439-6904816)
               

               
               186-610, gnl|Mm7|chr17 (66115079-66114715)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               cty (0.10408)

	186-610, gnl\|bosTau2\|chr11 (31152553-31152123)
	186-610, gnl\|Hg17\|chr18 (6904439-6904816)
	186-610, gnl\|Mm7\|chr17 (66115079-66114715)