Non-Coding RNA Search

Ss1.1-Mixc-0032b03.5

Sequence:


               
               CCTTCTACCACCCGGGTGTCAATGGGCCCCCCCTGCCCTAGGACCGCCCGCCCGCCCGCA
CACAGCCCTGCGGACTGTAGCCTGGCTCCTTCCACCCTTTTATGGCTTCTGTGAGGCCCA
CTGTCCCCTGCCCCCAGCCGATGAGGAGCTGGCCCCCTCAGCGCCCACCTGCCTGGGTTC
CTGGGGGTTTTCTGATCACTGGTGCGCATCGATGTACATATTTCCCTCCAGTCTGGGGAG
GAGAGACTGGACACATTCTGTACCCTGGACTGAAGAGGAGACCCAGTTGGCTTCACTTTT
TGAGGAGAGTTGTCCGGTTTCCCAAGTCCCTCCCTCCCCGGTGTGACCCTGCGTGCCGGA
GAACCTGAAGCTAGCGAGGCCGGAGCCCACCTCTGCTCTCCTGCGCTGGGTCCCGACGCG
TGTGAGATCATCCCAGCCACGGATATTCCTCCCTGCGGGGTAGAGGTGGTAAGGGGTGCT
CTACCTCCCTCTGCACGGAGGGGCTCGGTCCGGCTGGATTTGAGTCCGGAACACACCTCG
CCCCCCCACCCCCCCTCCAGCCATCCGTTCTGAATTCTTTCTCTAAGGACTGCGACCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCTACCACCCGGGTGTCAATGGGCCCCCCCTGCCCTAGGACCGCCCGCCCGCCCGCA
CACAGCCCTGCGGACTGTAGCCTGGCTCCTTCCACCCTTTTATGGCTTCTGTGAGGCCCA
CTGTCCCCTGCCCCCAGCCGATGAGGAGCTGGCCCCCTCAGCGCCCACCTGCCTGGGTTC
CTGGGGGTTTTCTGATCACTGGTGCGCATCGATGTACATATTTCCCTCCAGTCTGGGGAG
GAGAGACTGGACACATTCTGTACCCTGGACTGAAGAGGAGACCCAGTTGGCTTCACTTTT
TGAGGAGAGTTGTCCGGTTTCCCAAGTCCCTCCCTCCCCGGTGTGACCCTGCGTGCCGGA
GAACCTGAAGCTAGCGAGGCCGGAGCCCACCTCTGCTCTCCTGCGCTGGGTCCCGACGCG
TGTGAGATCATCCCAGCCACGGATATTCCTCCCTGCGGGGTAGAGGTGGTAAGGGGTGCT
CTACCTCCCTCTGCACGGAGGGGCTCGGTCCGGCTGGATTTGAGTCCGGAACACACCTCG
CCCCCCCACCCCCCCTCCAGCCATCCGTTCTGAATTCTTTCTCTAAGGACTGCGACCGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-193, - strand, RNAz p=0.919527

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-193, - strand, RNAz p=0.919527

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-412, gnl|bosTau2|chr23 (20890703-20891104)
               

               
               1-412, gnl|Hg17|chr6 (30677345-30676934)
               

               
               1-412, gnl|Mm7|chr17 (34035392-34035775)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-412, gnl|bosTau2|chr23 (20890703-20891104)
               

               
               1-412, gnl|Hg17|chr6 (30677345-30676934)
               

               
               1-412, gnl|Mm7|chr17 (34035392-34035775)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-412, gnl\|bosTau2\|chr23 (20890703-20891104)
	1-412, gnl\|Hg17\|chr6 (30677345-30676934)
	1-412, gnl\|Mm7\|chr17 (34035392-34035775)