Non-Coding RNA Search

Ss1.1-Mixc-0032b09.3

Sequence:


               
               TTGATTCAGAACCGCGCTAAGCAGGGAAGATGGCTGCATCCCAACCTCAGGCTTCTGCAG
CTTCTTCTGCTGCTGCTGGTGTGTCGGGTCCGGGTTCGGCTGGCGGCTCGGGTCCTCAGC
AGCAGCCGCAACCACAGGCACAGTTGGTGGGGCCTGCCCAGGGCGGGCTTTTGCAGCAAC
AGCAACAGGACTTCGATCCTGTACAGCGATATAAGATGCTCATCCCGCAGCTAAAAGAGA
GTCTGCAGACCCTGATGAAGGTTGCAGCCCAGAACTTGATTCAGAACACTAACATTGACA
ATGGACAAAAGAGCAGCGATGGACCCATACAGCGCTTTGACAAGTGTCTGGAGGAGTTCT
ACGCACTCTGTGACCAGCTGGAGCTCTGCCTGCGCCTGGCACATGAGTGCCTGTCACAGA
GTTGCGACAGTGCCAAGCACTCTCCGACGCTGGTGCCTACAGCCACCAAGCCCGATGCCG
TGCAGCCTGACAGCCTGCCCTACCCACAGTACCTGGCGGTCATCAAAGCCCAGATTGCCT
GTGCCAAGGACATTCACACTGCTCTCCTGGACTGCGCCAACAAGGTCACAGGCAAGACGC
CTGCGCCACCAGCAGGCCCTGGGGGCACCCTGTGAGTTGGCCAGACTAGGAATGGGGCAG
GCAGTGGGGGAGGGGGACAGGGAGGGAATGAAAAGTGGCCTCAAAGCAAGGCCTGAGATT
GGGGTATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGATTCAGAACCGCGCTAAGCAGGGAAGATGGCTGCATCCCAACCTCAGGCTTCTGCAG
CTTCTTCTGCTGCTGCTGGTGTGTCGGGTCCGGGTTCGGCTGGCGGCTCGGGTCCTCAGC
AGCAGCCGCAACCACAGGCACAGTTGGTGGGGCCTGCCCAGGGCGGGCTTTTGCAGCAAC
AGCAACAGGACTTCGATCCTGTACAGCGATATAAGATGCTCATCCCGCAGCTAAAAGAGA
GTCTGCAGACCCTGATGAAGGTTGCAGCCCAGAACTTGATTCAGAACACTAACATTGACA
ATGGACAAAAGAGCAGCGATGGACCCATACAGCGCTTTGACAAGTGTCTGGAGGAGTTCT
ACGCACTCTGTGACCAGCTGGAGCTCTGCCTGCGCCTGGCACATGAGTGCCTGTCACAGA
GTTGCGACAGTGCCAAGCACTCTCCGACGCTGGTGCCTACAGCCACCAAGCCCGATGCCG
TGCAGCCTGACAGCCTGCCCTACCCACAGTACCTGGCGGTCATCAAAGCCCAGATTGCCT
GTGCCAAGGACATTCACACTGCTCTCCTGGACTGCGCCAACAAGGTCACAGGCAAGACGC
CTGCGCCACCAGCAGGCCCTGGGGGCACCCTGTGAGTTGGCCAGACTAGGAATGGGGCAG
GCAGTGGGGGAGGGGGACAGGGAGGGAATGAAAAGTGGCCTCAAAGCAAGGCCTGAGATT
GGGGTATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RBZ4_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RBZ4_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               131-248, - strand, RNAz p=0.609344
               

               
               392-510, - strand, RNAz p=0.570397

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-248, - strand, RNAz p=0.609344
               

               
               392-510, - strand, RNAz p=0.570397

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               14-248, gnl|bosTau2|chr18 (43762932-43762701)
               

               
               14-248, gnl|Hg17|chr19 (44573887-44574118)
               

               
               14-248, gnl|Mm7|chr7 (25326577-25326349)
               


               
               392-708, gnl|bosTau2|chr18 (43759699-43759396)
               

               
               392-708, gnl|Hg17|chr19 (44579936-44580263)
               

               
               392-708, gnl|Mm7|chr7 (25320923-25320632)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-248, gnl|bosTau2|chr18 (43762932-43762701)
               

               
               14-248, gnl|Hg17|chr19 (44573887-44574118)
               

               
               14-248, gnl|Mm7|chr7 (25326577-25326349)
               


               
               392-708, gnl|bosTau2|chr18 (43759699-43759396)
               

               
               392-708, gnl|Hg17|chr19 (44579936-44580263)
               

               
               392-708, gnl|Mm7|chr7 (25320923-25320632)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               cov (0.528611)
               

               
               sme (0.305437)
               

               
               nmm (0.265604)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.528611)
               

               
               sme (0.305437)
               

               
               nmm (0.265604)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)

	131-248, - strand, RNAz p=0.609344
	392-510, - strand, RNAz p=0.570397

	14-248, gnl\|bosTau2\|chr18 (43762932-43762701)
	14-248, gnl\|Hg17\|chr19 (44573887-44574118)
	14-248, gnl\|Mm7\|chr7 (25326577-25326349)

	392-708, gnl\|bosTau2\|chr18 (43759699-43759396)
	392-708, gnl\|Hg17\|chr19 (44579936-44580263)
	392-708, gnl\|Mm7\|chr7 (25320923-25320632)

	cov (0.528611)
	sme (0.305437)
	nmm (0.265604)
	eep (0.245128)
	cly (0.241284)
	ebs (0.236602)
	nms (0.213858)
	col (0.195008)
	nlu (0.191681)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	cje (0.165235)
	nco (0.161734)
	hyp (0.142837)
	lnt (0.142308)
	ssp (0.13552)
	ova (0.129132)
	med (0.116252)