Ss1.1-Mixc-0032c22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGATTCCCAAGAGGGAAGATGGAGAAGAAGCAGGAGAGTGGCTGAGCTCCGTGCGGGCA CATGTTGTGCCCACTGGCATTGGGCGAGCCCGAGCAGAACTCTTTGAGAAGCAGATTGTC CAGCATGGTGGCCAGCTATGCCCTGCCCAGGCCCCGGGGGTCACTCACATTGTGGTGGAT GAAGGCATGGACTGTGAGCGAGCCCTGCGCCTCCTTAGACTGCCCAGGCTGCCCCCAGGT GCTCAGCTGGTGAAGTCTGCCTGGTTGAGCTTGTGCCTGCAGGAGAGAAGGCTGGTGGAC ACGGCAGGATTCAGCATCTTCATCCCCGAGAGGTACCTGGATCAAGCACAGCTCAGCAAG GCAGGCAATGACTCCTCTACTTCCCCTGGAGCCCGTGAGACTCCGCTCAGGACAGCCCTC TCTCCTCCCTCTCCTCCCACCAGACCTGTATCTCCTTCTGAGAGGACAGAGGAGTTTGCG AGCATCCAAGCACAGCCCGGCTCTGATGGTGACACCAGTGATGGGGAAGAGACCCAGGTT GCCTGCGCTATACCCGGGATTGGAAAGCGGATGGCTGAGAAGATCCTAGAGATTCTGGAG AGTGGGCACCTGAGGAAGCTCGACCACATCAGCGAAAGCGTGCCTGTCTTACAGCTCTTC TCCAACATCTGGGGAGCTGGAACCAAGACTGCCCAGCTGTGGTACCATCAGGGTTTCCGG AGCCTAGAAGATATCCGAAACCAAGCCTCTCTGACTACCCAGCAGGCCATTGGTCTGAAG CATTACCATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTTCAGAGATCGAGCAGACA GTCCGGGAAGCAGCTCAAGCCTTCAACCCCGGGCTGCTGTGCGTGGCCTGTGGTTCGTAC CGACGCGGAAGGGCAACCTGTGGTGATGTGGACGTGCTACTCACCCACCCGGACGGCCGG TCTCACCAAGGCATCTTCAGCCGCCTTCTGGACAGCCTCCGGCAGCGAGGGTTCCTGACG GATGACTTGGTGAGCCAGGAGCAGCACGGCCAGCAGCAGAAGTACCTGGGCGTGTGCCAG CTCCCAGGGCCAGGGAGGCGGCACCGACGCCTGGACATTATCGTCGTTCCCTACAGCGAG TTTGCCTGCGCCCTGCTCTACTTCACCGGCTCTGCCCACTTCAACCGCTCCATGCGGGCG CTGGCCAAGACCAAGGGCATGAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGATTCCCAAGAGGGAAGATGGAGAAGAAGCAGGAGAGTGGCTGAGCTCCGTGCGGGCA CATGTTGTGCCCACTGGCATTGGGCGAGCCCGAGCAGAACTCTTTGAGAAGCAGATTGTC CAGCATGGTGGCCAGCTATGCCCTGCCCAGGCCCCGGGGGTCACTCACATTGTGGTGGAT GAAGGCATGGACTGTGAGCGAGCCCTGCGCCTCCTTAGACTGCCCAGGCTGCCCCCAGGT GCTCAGCTGGTGAAGTCTGCCTGGTTGAGCTTGTGCCTGCAGGAGAGAAGGCTGGTGGAC ACGGCAGGATTCAGCATCTTCATCCCCGAGAGGTACCTGGATCAAGCACAGCTCAGCAAG GCAGGCAATGACTCCTCTACTTCCCCTGGAGCCCGTGAGACTCCGCTCAGGACAGCCCTC TCTCCTCCCTCTCCTCCCACCAGACCTGTATCTCCTTCTGAGAGGACAGAGGAGTTTGCG AGCATCCAAGCACAGCCCGGCTCTGATGGTGACACCAGTGATGGGGAAGAGACCCAGGTT GCCTGCGCTATACCCGGGATTGGAAAGCGGATGGCTGAGAAGATCCTAGAGATTCTGGAG AGTGGGCACCTGAGGAAGCTCGACCACATCAGCGAAAGCGTGCCTGTCTTACAGCTCTTC TCCAACATCTGGGGAGCTGGAACCAAGACTGCCCAGCTGTGGTACCATCAGGGTTTCCGG AGCCTAGAAGATATCCGAAACCAAGCCTCTCTGACTACCCAGCAGGCCATTGGTCTGAAG CATTACCATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTTCAGAGATCGAGCAGACA GTCCGGGAAGCAGCTCAAGCCTTCAACCCCGGGCTGCTGTGCGTGGCCTGTGGTTCGTAC CGACGCGGAAGGGCAACCTGTGGTGATGTGGACGTGCTACTCACCCACCCGGACGGCCGG TCTCACCAAGGCATCTTCAGCCGCCTTCTGGACAGCCTCCGGCAGCGAGGGTTCCTGACG GATGACTTGGTGAGCCAGGAGCAGCACGGCCAGCAGCAGAAGTACCTGGGCGTGTGCCAG CTCCCAGGGCCAGGGAGGCGGCACCGACGCCTGGACATTATCGTCGTTCCCTACAGCGAG TTTGCCTGCGCCCTGCTCTACTTCACCGGCTCTGCCCACTTCAACCGCTCCATGCGGGCG CTGGCCAAGACCAAGGGCATGAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 36-155, - strand, RNAz p=0.752844 | |
| 230-346, - strand, RNAz p=0.688802 | |
| 533-630, + strand, RNAz p=0.555137 | |
| 595-712, + strand, RNAz p=0.720683 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 36-155, - strand, RNAz p=0.752844 | |
| 230-346, - strand, RNAz p=0.688802 | |
| 533-630, + strand, RNAz p=0.555137 | |
| 595-712, + strand, RNAz p=0.720683 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 36-346, gnl|bosTau2|chr26 (13970680-13970369) | |
| 36-346, gnl|Hg17|chr10 (103335905-103335594) | |
| 36-346, gnl|Mm7|chr19 (45455824-45455513) | |
| 533-712, gnl|bosTau2|chr26 (13968623-13968444) | |
| 533-712, gnl|canFam2|chr28 (17193365-17193566) | |
| 533-712, gnl|danRer3|chrUn (39997754-39997576) | |
| 533-712, gnl|dasNov1|scaffold_7927 (87077-86876) | |
| 533-712, gnl|echTel1|scaffold_259110 (4489-4287) | |
| 533-712, gnl|fr1|chrUn (164397803-164397617) | |
| 533-712, gnl|galGal2|chr6 (21915889-21915710) | |
| 533-712, gnl|hg17|chr10 (103333232-103333433) | |
| 533-712, gnl|Hg17|chr10 (103333433-103333254) | |
| 533-712, gnl|loxAfr1|scaffold_32100 (34540-34339) | |
| 533-712, gnl|mm7|chr19 (45452804-45453003) | |
| 533-712, gnl|Mm7|chr19 (45453002-45452824) | |
| 533-712, gnl|monDom2|scaffold_14 (61942124-61941923) | |
| 533-712, gnl|oryCun1|scaffold_173524 (49688-49871) | |
| 533-712, gnl|panTro1|chr8 (105089767-105089968) | |
| 533-712, gnl|rheMac2|chr9 (101208626-101208827) | |
| 533-712, gnl|rn3|chr1 (250982817-250983016) | |
| 533-712, gnl|tetNig1|chr18 (5063336-5063515) | |
| 533-712, gnl|xenTro1|scaffold_475 (202467-202281) | |
| 1005-1224, gnl|bosTau2|chr26 (13965201-13964982) | |
| 1005-1224, gnl|Hg17|chr10 (103329569-103329350) | |
| 1005-1224, gnl|Mm7|chr19 (45450078-45449859) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-346, gnl|bosTau2|chr26 (13970680-13970369) | |
| 36-346, gnl|Hg17|chr10 (103335905-103335594) | |
| 36-346, gnl|Mm7|chr19 (45455824-45455513) | |
| 533-712, gnl|bosTau2|chr26 (13968623-13968444) | |
| 533-712, gnl|canFam2|chr28 (17193365-17193566) | |
| 533-712, gnl|danRer3|chrUn (39997754-39997576) | |
| 533-712, gnl|dasNov1|scaffold_7927 (87077-86876) | |
| 533-712, gnl|echTel1|scaffold_259110 (4489-4287) | |
| 533-712, gnl|fr1|chrUn (164397803-164397617) | |
| 533-712, gnl|galGal2|chr6 (21915889-21915710) | |
| 533-712, gnl|hg17|chr10 (103333232-103333433) | |
| 533-712, gnl|Hg17|chr10 (103333433-103333254) | |
| 533-712, gnl|loxAfr1|scaffold_32100 (34540-34339) | |
| 533-712, gnl|mm7|chr19 (45452804-45453003) | |
| 533-712, gnl|Mm7|chr19 (45453002-45452824) | |
| 533-712, gnl|monDom2|scaffold_14 (61942124-61941923) | |
| 533-712, gnl|oryCun1|scaffold_173524 (49688-49871) | |
| 533-712, gnl|panTro1|chr8 (105089767-105089968) | |
| 533-712, gnl|rheMac2|chr9 (101208626-101208827) | |
| 533-712, gnl|rn3|chr1 (250982817-250983016) | |
| 533-712, gnl|tetNig1|chr18 (5063336-5063515) | |
| 533-712, gnl|xenTro1|scaffold_475 (202467-202281) | |
| 1005-1224, gnl|bosTau2|chr26 (13965201-13964982) | |
| 1005-1224, gnl|Hg17|chr10 (103329569-103329350) | |
| 1005-1224, gnl|Mm7|chr19 (45450078-45449859) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) |