Non-Coding RNA Search

Ss1.1-Mixc-0032f19.5

Sequence:


               
               AAACTCCTCTGTTATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATTATGTA
TTCCCATCTAGTCGACTACTTCCCAGAATACGACGGACCCCAGCGAGATGCCCAGGCAGC
TCGAGAATTCATCCTGAAGATGTTCGTGGACCTGAACCCAGACAGTGACAAAATTATCTA
CTCCCACTTCACATGCGCCACAGACACCGAGAACATCCGCTTTGTCTTTGCTGCCGTCAA
GGACACCATCCTCCAGTTGAACCTGAAGGAGTACAATCTGGTCTAATTGTGCCTCCTCGA
CACCGCCCTTCCCTTCCCTGGTGGGCTATTGAAGCGATACAAGAGGGACTGTATTGCTGT
GGAAAACAATTTGCATAATACTAATTTATTGCCGTCCTGGACTCTGTGTGCAACTGTCCA
CAGAGTGTGTAGTAAATATTATAATTTTATTTAAACTATTCAGAGGAAAAACAGGATGCT
GAAGTACAGTCCCAGCACATTTCCTCTCTCTCTTTTTTTTAGGCAAAACCTTGTGACTCG
ATGTATTTTAAATTCTCAGTCATGCACTCACAAAGATAAGAGCTGTTTCTTCCTCTCTGT
CTCTCTCTCTTTTCTATTGAGCAAAATGAAGCTGATTTTCCTTGTCCTAACCTGTCCCTT
CCTCCTGATTTTTTCCCACATTACAATGGCCTTTATCCTGGTTTCATTCTTGATCAAGTT
TTCCTCTCGAATGATACAGTCAGGACAATGTCATTCAATTCAAGCCATCAACATCAGCTT
AATTTAACAGTTTGTAGTTTTTGCTGAAGGATTATAAGTATTAATACCATAGTTTTCAAT
GTATTGTTCTGGATACACATATAGAGGGGTTTTTTCAATATAAATATATTGTCTTGCCTC
ACTTTGGGCTGGGACAATGGATGCCCATCTAATGGTTAAATGTCTTTTTTTTCTTCTTTT
CCCTGTCTCCAGCCATAGTTGCTTGCTCAGCAAACCATACAGAAGTCAGTAAGGCAAGGC
CACAGACACACAGAAGGAATCCTTTATTTTAAAATGCCATGTGCCATTGTCCTTTCTCCT
TTCCTTGCCCTCTTTTTCCCCTCACCCTCCCTTCTTCAAATTGCAGATGCCAAAAAAGTA
TGCCAACAGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTCCTCTGTTATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATTATGTA
TTCCCATCTAGTCGACTACTTCCCAGAATACGACGGACCCCAGCGAGATGCCCAGGCAGC
TCGAGAATTCATCCTGAAGATGTTCGTGGACCTGAACCCAGACAGTGACAAAATTATCTA
CTCCCACTTCACATGCGCCACAGACACCGAGAACATCCGCTTTGTCTTTGCTGCCGTCAA
GGACACCATCCTCCAGTTGAACCTGAAGGAGTACAATCTGGTCTAATTGTGCCTCCTCGA
CACCGCCCTTCCCTTCCCTGGTGGGCTATTGAAGCGATACAAGAGGGACTGTATTGCTGT
GGAAAACAATTTGCATAATACTAATTTATTGCCGTCCTGGACTCTGTGTGCAACTGTCCA
CAGAGTGTGTAGTAAATATTATAATTTTATTTAAACTATTCAGAGGAAAAACAGGATGCT
GAAGTACAGTCCCAGCACATTTCCTCTCTCTCTTTTTTTTAGGCAAAACCTTGTGACTCG
ATGTATTTTAAATTCTCAGTCATGCACTCACAAAGATAAGAGCTGTTTCTTCCTCTCTGT
CTCTCTCTCTTTTCTATTGAGCAAAATGAAGCTGATTTTCCTTGTCCTAACCTGTCCCTT
CCTCCTGATTTTTTCCCACATTACAATGGCCTTTATCCTGGTTTCATTCTTGATCAAGTT
TTCCTCTCGAATGATACAGTCAGGACAATGTCATTCAATTCAAGCCATCAACATCAGCTT
AATTTAACAGTTTGTAGTTTTTGCTGAAGGATTATAAGTATTAATACCATAGTTTTCAAT
GTATTGTTCTGGATACACATATAGAGGGGTTTTTTCAATATAAATATATTGTCTTGCCTC
ACTTTGGGCTGGGACAATGGATGCCCATCTAATGGTTAAATGTCTTTTTTTTCTTCTTTT
CCCTGTCTCCAGCCATAGTTGCTTGCTCAGCAAACCATACAGAAGTCAGTAAGGCAAGGC
CACAGACACACAGAAGGAATCCTTTATTTTAAAATGCCATGTGCCATTGTCCTTTCTCCT
TTCCTTGCCCTCTTTTTCCCCTCACCCTCCCTTCTTCAAATTGCAGATGCCAAAAAAGTA
TGCCAACAGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874068|ref|XP_616794.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874068|ref|XP_616794.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               333-530, + strand, RNAz p=0.837445

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-530, + strand, RNAz p=0.837445

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC057777, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC057777, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               95-1152, gnl|bosTau2|chr16 (15107807-15108863)
               

               
               95-1152, gnl|Hg17|chr9 (77565984-77564940)
               

               
               95-1152, gnl|Mm7|chr19 (16084131-16085280)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-1152, gnl|bosTau2|chr16 (15107807-15108863)
               

               
               95-1152, gnl|Hg17|chr9 (77565984-77564940)
               

               
               95-1152, gnl|Mm7|chr19 (16084131-16085280)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               tbr (0.154178)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               tbr (0.154178)

	95-1152, gnl\|bosTau2\|chr16 (15107807-15108863)
	95-1152, gnl\|Hg17\|chr9 (77565984-77564940)
	95-1152, gnl\|Mm7\|chr19 (16084131-16085280)