Non-Coding RNA Search

Ss1.1-Mixc-0032g14.3.5

Sequence:


               
               TTTTTTTTTTTTTTTGATGAAGCCACTGCCTTTATTGCATAGACCTTTTCAATTGCTTTG
ACAACTGGGAGCAGGGGACGCACAAGAGACAGAAGACAGGGGACACGAACTTCCCCGCCC
CACCCGCGGGGAGAGGAACATTAGTGCAAGTCGGTGCGCCGGCCCCGGGGAACCTGCCCC
TCCTCGGCTGATTGGCCAGCTTAGTGGAGGCACCGCAGTGGATAGGGCGAGACCCTCCCG
CCCATACATTCTAGGTCGCGTCATTGGACCACTTTTAGGACAGGCTCCGCCCTCAGCCGA
CCTAGCCTCCTAAGAGCGCGCGAGGAGCTCCGCCCTCGATCAGGCACTACCCTTGGGGCG
AGCCTATTTCTTCAGGATCCTCTCCCCCAGGAATTCGGGACACCCTCCCCTATCACCTAG
GGGAAGGCGCAATCCTGAGACTGGGCCAGGACCCGTGCGGCCTCCGTCCTGACTGTAGCA
GCCACGCCGCACCCCCAACTCAGGCCCCGCCCCTGGCGGACTCCAGGCTTGGTTGGGTTC
AGGGCTCCCGCCCAAGGCACCCCGGAGGACCAGTGAGCAGTGTACCAAGGCCCGGATGCA
TCTGCGCCTGCAATGGCCCATACTCCACCTGCTCCCCGTCCACTGTCAGCACGCCGCGGG
GCGTGAGAGGCTCGAGGCGGAAGGCACGAGCCGCGGCATAGCCCAGCTGCGGACAGCCCA
GGCTGAAGTGGCTGCCGTGCTCCATGGCCAGAAAAAGGCGCAGCAGTGCTGCCCGCGAGA
TGCCGCTGCGCACCCAACACAGGTGCACCAAGCCGTCGTCAAAGCGTGCGTGGGGGGCTG
CCACCAGGTCAGCCCCTAGGTGACTGGGTGAGATGGCCAACATAAGCACAAAGTCCCCCT
CCAATGTCACCCAGTCTGGGGGTAGTGGAGTGCCCAGAGGAGGGAGCAGGTGGTCGGGTG
GGCCCCCAGTGGAGATGGCTACTGGGATATCAGGGGTGGGAGGCAGGAGCTCAGAGGATG
CTGGCATTTCTGGGGCCCCCTCGGTGATGGGTGAAAGTTGAGCTGCCTTGGGGGAGCCAG
GGGGCGAGGGCAGCAGTGGATCTGGGGATAGCGGGGCATCCCCAGCCCCACCCCAGTCAC
CAGCCAGCTCTGGGCACCCACCATTGAGGGACAGGACAGGTAGGGGTTCAGGTGAGCCAG
GAGAGGTTAGGGTAGGCAGGGGCAGGGGCAGGGGCAGGTCAGACACAGAGCGATGCAGGG
GTGAGTGGGCCACGGGTGGGGCTGGGGCCGGGGCCAGGGTCAACTCTGACTTGGCACGTG
GCAGACCATGGGCAGGAGTGGGTGAGGCAGGTTCCACGGTGGCAGGGAGGTAGGAGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTGATGAAGCCACTGCCTTTATTGCATAGACCTTTTCAATTGCTTTG
ACAACTGGGAGCAGGGGACGCACAAGAGACAGAAGACAGGGGACACGAACTTCCCCGCCC
CACCCGCGGGGAGAGGAACATTAGTGCAAGTCGGTGCGCCGGCCCCGGGGAACCTGCCCC
TCCTCGGCTGATTGGCCAGCTTAGTGGAGGCACCGCAGTGGATAGGGCGAGACCCTCCCG
CCCATACATTCTAGGTCGCGTCATTGGACCACTTTTAGGACAGGCTCCGCCCTCAGCCGA
CCTAGCCTCCTAAGAGCGCGCGAGGAGCTCCGCCCTCGATCAGGCACTACCCTTGGGGCG
AGCCTATTTCTTCAGGATCCTCTCCCCCAGGAATTCGGGACACCCTCCCCTATCACCTAG
GGGAAGGCGCAATCCTGAGACTGGGCCAGGACCCGTGCGGCCTCCGTCCTGACTGTAGCA
GCCACGCCGCACCCCCAACTCAGGCCCCGCCCCTGGCGGACTCCAGGCTTGGTTGGGTTC
AGGGCTCCCGCCCAAGGCACCCCGGAGGACCAGTGAGCAGTGTACCAAGGCCCGGATGCA
TCTGCGCCTGCAATGGCCCATACTCCACCTGCTCCCCGTCCACTGTCAGCACGCCGCGGG
GCGTGAGAGGCTCGAGGCGGAAGGCACGAGCCGCGGCATAGCCCAGCTGCGGACAGCCCA
GGCTGAAGTGGCTGCCGTGCTCCATGGCCAGAAAAAGGCGCAGCAGTGCTGCCCGCGAGA
TGCCGCTGCGCACCCAACACAGGTGCACCAAGCCGTCGTCAAAGCGTGCGTGGGGGGCTG
CCACCAGGTCAGCCCCTAGGTGACTGGGTGAGATGGCCAACATAAGCACAAAGTCCCCCT
CCAATGTCACCCAGTCTGGGGGTAGTGGAGTGCCCAGAGGAGGGAGCAGGTGGTCGGGTG
GGCCCCCAGTGGAGATGGCTACTGGGATATCAGGGGTGGGAGGCAGGAGCTCAGAGGATG
CTGGCATTTCTGGGGCCCCCTCGGTGATGGGTGAAAGTTGAGCTGCCTTGGGGGAGCCAG
GGGGCGAGGGCAGCAGTGGATCTGGGGATAGCGGGGCATCCCCAGCCCCACCCCAGTCAC
CAGCCAGCTCTGGGCACCCACCATTGAGGGACAGGACAGGTAGGGGTTCAGGTGAGCCAG
GAGAGGTTAGGGTAGGCAGGGGCAGGGGCAGGGGCAGGTCAGACACAGAGCGATGCAGGG
GTGAGTGGGCCACGGGTGGGGCTGGGGCCGGGGCCAGGGTCAACTCTGACTTGGCACGTG
GCAGACCATGGGCAGGAGTGGGTGAGGCAGGTTCCACGGTGGCAGGGAGGTAGGAGAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N2M3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N2M3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               943-1222, + strand, RNAz p=0.722689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               943-1222, + strand, RNAz p=0.722689

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               504-1380, gnl|bosTau2|chr18 (50549888-50550764)
               

               
               504-1380, gnl|Hg17|chr19 (53824877-53824001)
               

               
               504-1380, gnl|Mm7|chr7 (41886998-41887834)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               504-1380, gnl|bosTau2|chr18 (50549888-50550764)
               

               
               504-1380, gnl|Hg17|chr19 (53824877-53824001)
               

               
               504-1380, gnl|Mm7|chr7 (41886998-41887834)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nco (0.485201)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.485201)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	504-1380, gnl\|bosTau2\|chr18 (50549888-50550764)
	504-1380, gnl\|Hg17\|chr19 (53824877-53824001)
	504-1380, gnl\|Mm7\|chr7 (41886998-41887834)

	nco (0.485201)
	pty (0.285429)
	lnt (0.284616)
	fhi (0.169578)
	ese (0.126502)
	jej (0.0989218)