Non-Coding RNA Search

Ss1.1-Mixc-0032i08.3

Sequence:


               
               TAACATTTTATATGCCAACACTATTTTCTAGCTTAATGTTGCAAACATCTTTAGTATTTC
ATCAGAAAGGAAGTTTTTTTTTTTTTTCCAAGAAATGCAAAATGATTTTATGTTAAGCTT
TATAACACCCTGGGCGTGTGGGGATGCCCAGCTTTGGGATAGATGTATGAACCTCGATGC
CCACAAAGTAGTCCTCTGGGGGCCAGGCCTGTTCACACCAGTGGTGACTGTGCTCCCAAG
GGGCTAGTTCCGCTCTGAGCTGTGGAATGAACACCCCAGTTGATAGACAATGACTGTGAG
AGTAGTTAATGTCGTTTTGCACTTCTGACTGCTTTTTATCAATCCAAAAACTAACCTTTA
AAAGAAAATTTAAATAAAAGTTCACCTTTGTATTCTTTCATTACAGATAACCATGAAATG
AAAGGGGATGAAATCTACTTGGGACAGCTAGCAAGGCACCAAGCTACTGCTGTTGAAAGA
TGACAGCAATTCAGGGAAGACCTATTAAAGCAAATTGAACATATCAAGGCCAATTTAAAC
TAGAAGAAATAGGCTTGTTTGTTGTCTAGCCAATATTTATCATTAAAATCAAGAATTATA
GTAACAAGCTTTTAGGAAAATCAGAGTGGGGTAGACTTTTTCAAAGCAATTTTTAAGTGG
AATAGTTAATGTTGAATGTTTACAGGGTTTAAGAACTACCGTATACGCAAAATAAACACT
TATTTTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACATTTTATATGCCAACACTATTTTCTAGCTTAATGTTGCAAACATCTTTAGTATTTC
ATCAGAAAGGAAGTTTTTTTTTTTTTTCCAAGAAATGCAAAATGATTTTATGTTAAGCTT
TATAACACCCTGGGCGTGTGGGGATGCCCAGCTTTGGGATAGATGTATGAACCTCGATGC
CCACAAAGTAGTCCTCTGGGGGCCAGGCCTGTTCACACCAGTGGTGACTGTGCTCCCAAG
GGGCTAGTTCCGCTCTGAGCTGTGGAATGAACACCCCAGTTGATAGACAATGACTGTGAG
AGTAGTTAATGTCGTTTTGCACTTCTGACTGCTTTTTATCAATCCAAAAACTAACCTTTA
AAAGAAAATTTAAATAAAAGTTCACCTTTGTATTCTTTCATTACAGATAACCATGAAATG
AAAGGGGATGAAATCTACTTGGGACAGCTAGCAAGGCACCAAGCTACTGCTGTTGAAAGA
TGACAGCAATTCAGGGAAGACCTATTAAAGCAAATTGAACATATCAAGGCCAATTTAAAC
TAGAAGAAATAGGCTTGTTTGTTGTCTAGCCAATATTTATCATTAAAATCAAGAATTATA
GTAACAAGCTTTTAGGAAAATCAGAGTGGGGTAGACTTTTTCAAAGCAATTTTTAAGTGG
AATAGTTAATGTTGAATGTTTACAGGGTTTAAGAACTACCGTATACGCAAAATAAACACT
TATTTTTAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               8-728, gnl|bosTau2|chr3 (31378889-31379590)
               

               
               8-728, gnl|Hg17|chr1 (109188111-109186496)
               

               
               8-728, gnl|Mm7|chr3 (108496288-108497123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-728, gnl|bosTau2|chr3 (31378889-31379590)
               

               
               8-728, gnl|Hg17|chr1 (109188111-109186496)
               

               
               8-728, gnl|Mm7|chr3 (108496288-108497123)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               ova (0.387397)
               

               
               cmu (0.372787)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               ova (0.387397)
               

               
               cmu (0.372787)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	8-728, gnl\|bosTau2\|chr3 (31378889-31379590)
	8-728, gnl\|Hg17\|chr1 (109188111-109186496)
	8-728, gnl\|Mm7\|chr3 (108496288-108497123)

	pro (0.512033)
	cbe (0.478469)
	ova (0.387397)
	cmu (0.372787)
	nms (0.213858)
	aor (0.195274)
	sto (0.179824)
	gul (0.177588)
	cki (0.165235)
	mga (0.160205)
	liv (0.146284)
	csk (0.140746)
	nca (0.136874)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	bla (0.124347)
	spc (0.113366)