Non-Coding RNA Search

Ss1.1-Mixc-0032i09.3

Sequence:


               
               CGATTTCCTCAGGTACGCAGTGATCCGATTCAACCAGTATTTCAAGGTGAAGCCTCAAGT
ATCGGCCTTGGAGATGCCAAAGTGACCAGCTTCCCCCTCCCTCTCCTACCCATCTGCCTG
GCCAGACCCATCCTCCAGGGCTCAGTTCTGCTCTGGGGTCTGCACCCTCGGACAAGATGG
GAGAGGGGACAGGTGGGTGTCCCAGGAGAAGGCTCTGCCCCTGCTGCCAGCCCCTGGGAC
GCTGCTGGTGACCACATTCTCCTTTGGAGGGGTTGACAGGACCCAGCTCTGGGGATCGTC
TTCACCTTATCAGACTTGGGGTCGGTGGTGGCAGAGGGCCTGTGGCCAGCCAGGACTCTG
ACCACACCCATCCCGGGAAGCCCGGCATTCCTAGCCCGGGGCCATGCTGGAATCTGGGCT
GCCTTAGATGTGTCTTTGACCTTGCTGGCCTGGGGAAGGGGGAAGGTGGGAGGGCTCCAT
TCTACCTCCAGTTGCCCTGAGCCTCCAGCCTGTCTACCCCTGCATGCCCCACATGGGAGG
TGCTGAACTCAAACCAGCATCCTGCCAGCTCTGACAGATGGATGTAGATATTTGGGGTAG
GGGAGGTCCTAGAATTAGGTTTGATGGCTCGCCCAGCAGCCACCTCATCTGAGATCCCTG
TGTTTCTCCAAATCAGATCCAATCCAATAACCCCTTCCCAAACCTCAGCCCAAGGACATG
TGCTCTCCTCCAGGCTTGGGTTCTGTCTCTCTGCCACCTGCTGGGAGGGAAGGGAATGGT
GACATCTTGGGCCACCAAGGGCTGGCTCTGCTTCATGCTGTGGCTTGGCTGGAGGGAACG
TAGCCAGCAGCCTCCTGCCTTGCTCCCTCCCCTTCCCTCCTCAAGTGGATCCAGGGTCTC
GCTGCTGGGGAACGACTCGTGAGAGTTAAACAGCAGGGCCAGGGACCGGGGCCAGGGACC
TCAGGGGCTTGCCCAGTGTGGGGGAGCCTGGGTGGGATGGGTTGTGAAGGTGCTGAAGGA
GCTGCCACCCCTGACTCCCAATGGCCTCCACCTCCCTTCTGCCCTCACAGCCTCATGGGC
TTTCCTGCCTCTGACCTATAAAATGATTCATTTGTAAATTATCATGGTTTTCTGCATTAA
ACTGACCATTTATGGACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATTTCCTCAGGTACGCAGTGATCCGATTCAACCAGTATTTCAAGGTGAAGCCTCAAGT
ATCGGCCTTGGAGATGCCAAAGTGACCAGCTTCCCCCTCCCTCTCCTACCCATCTGCCTG
GCCAGACCCATCCTCCAGGGCTCAGTTCTGCTCTGGGGTCTGCACCCTCGGACAAGATGG
GAGAGGGGACAGGTGGGTGTCCCAGGAGAAGGCTCTGCCCCTGCTGCCAGCCCCTGGGAC
GCTGCTGGTGACCACATTCTCCTTTGGAGGGGTTGACAGGACCCAGCTCTGGGGATCGTC
TTCACCTTATCAGACTTGGGGTCGGTGGTGGCAGAGGGCCTGTGGCCAGCCAGGACTCTG
ACCACACCCATCCCGGGAAGCCCGGCATTCCTAGCCCGGGGCCATGCTGGAATCTGGGCT
GCCTTAGATGTGTCTTTGACCTTGCTGGCCTGGGGAAGGGGGAAGGTGGGAGGGCTCCAT
TCTACCTCCAGTTGCCCTGAGCCTCCAGCCTGTCTACCCCTGCATGCCCCACATGGGAGG
TGCTGAACTCAAACCAGCATCCTGCCAGCTCTGACAGATGGATGTAGATATTTGGGGTAG
GGGAGGTCCTAGAATTAGGTTTGATGGCTCGCCCAGCAGCCACCTCATCTGAGATCCCTG
TGTTTCTCCAAATCAGATCCAATCCAATAACCCCTTCCCAAACCTCAGCCCAAGGACATG
TGCTCTCCTCCAGGCTTGGGTTCTGTCTCTCTGCCACCTGCTGGGAGGGAAGGGAATGGT
GACATCTTGGGCCACCAAGGGCTGGCTCTGCTTCATGCTGTGGCTTGGCTGGAGGGAACG
TAGCCAGCAGCCTCCTGCCTTGCTCCCTCCCCTTCCCTCCTCAAGTGGATCCAGGGTCTC
GCTGCTGGGGAACGACTCGTGAGAGTTAAACAGCAGGGCCAGGGACCGGGGCCAGGGACC
TCAGGGGCTTGCCCAGTGTGGGGGAGCCTGGGTGGGATGGGTTGTGAAGGTGCTGAAGGA
GCTGCCACCCCTGACTCCCAATGGCCTCCACCTCCCTTCTGCCCTCACAGCCTCATGGGC
TTTCCTGCCTCTGACCTATAAAATGATTCATTTGTAAATTATCATGGTTTTCTGCATTAA
ACTGACCATTTATGGACAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-357, + strand, RNAz p=0.748617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-357, + strand, RNAz p=0.748617

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               99-214, + strand, RNAmicro p=0.997678
               

               
               256-336, + strand, RNAmicro p=0.973453

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               99-214, + strand, RNAmicro p=0.997678
               

               
               256-336, + strand, RNAmicro p=0.973453

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC010082, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC010082, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-420, gnl|bosTau2|chr23 (16419896-16420289)
               

               
               10-420, gnl|Hg17|chr1 (200833044-200832707)
               

               
               10-420, gnl|Mm7|chr1_random (7589628-7589996)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-420, gnl|bosTau2|chr23 (16419896-16420289)
               

               
               10-420, gnl|Hg17|chr1 (200833044-200832707)
               

               
               10-420, gnl|Mm7|chr1_random (7589628-7589996)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               pla (0.133672)

	99-214, + strand, RNAmicro p=0.997678
	256-336, + strand, RNAmicro p=0.973453

	10-420, gnl\|bosTau2\|chr23 (16419896-16420289)
	10-420, gnl\|Hg17\|chr1 (200833044-200832707)
	10-420, gnl\|Mm7\|chr1_random (7589628-7589996)