Non-Coding RNA Search

Ss1.1-Mixc-0032i20.5

Sequence:


               
               CGGGAAAGCACTTCAGGCAGCTGCCATTGCACCACCTCCAGGTCAGTGTTGGAACAAGGT
AGAGTAGATACCCCAGTGTAAGGGGGGCAGGGATGGGGGCACTCTGGGGGCTAAGGGAAG
AAAGTATATGTTGAGTGTCTTCCTTCTATTACTCTGATACTCTTTGATAACTTCTATTTT
AATTTTTTAAAAATAGTCAATTTATGAGTCAAAGAGTATCAAATCAATGTTGGCTGGGCC
ACCAAGGGTGGGGAGAGGAGCTGGAAGCTCCGGGCATTAGAAAGGGATGGTTGCTGGCAG
AGATCTCAACTATAGAATGTGTTTTTCAGGAGGCAGCAAGGTCATTTTGAAGGTAAAACT
TTGAGTTTATCATGTTTTAATTTGAGGGACAGGGAGAAATGGATCATCACCAGTTGCCCC
TCATCTAACGCCACAGAAGTGGAGTCTCAAAGGAACACCTCCTGAGGAGCTGGGGCTGAG
TTAATTGTAGACAGGCCTGTTTGGTTCCTGCTTATCCCCACCCTGAGGCACCAGCTTCCT
CACCATCTCTGCTCCATTGGGGTGTAGTCCAGTTTTTCTTACATATGTAAGAGTCAAGTC
TACCCTCTTGCCTCCTGTTCTGGGAGTGGAGAGGAAATCAGTGATACTGGAGGTGACTGG
TTGCTATGTCATGGGTTTGAGTTGCATTTGGCTGTAACACAATCTTGTTAGAAAAAGTAT
GTGGGGAGAGGCAGAGAGGGAGAAGGCCTCTCCCCACACACACAGTGAGACACATCTTAA
TGGGTCTCTAATCTTGTTTGTAGGGATTCTGTTGGTTGAATGCCTGAAGAGGGAGGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAAAGCACTTCAGGCAGCTGCCATTGCACCACCTCCAGGTCAGTGTTGGAACAAGGT
AGAGTAGATACCCCAGTGTAAGGGGGGCAGGGATGGGGGCACTCTGGGGGCTAAGGGAAG
AAAGTATATGTTGAGTGTCTTCCTTCTATTACTCTGATACTCTTTGATAACTTCTATTTT
AATTTTTTAAAAATAGTCAATTTATGAGTCAAAGAGTATCAAATCAATGTTGGCTGGGCC
ACCAAGGGTGGGGAGAGGAGCTGGAAGCTCCGGGCATTAGAAAGGGATGGTTGCTGGCAG
AGATCTCAACTATAGAATGTGTTTTTCAGGAGGCAGCAAGGTCATTTTGAAGGTAAAACT
TTGAGTTTATCATGTTTTAATTTGAGGGACAGGGAGAAATGGATCATCACCAGTTGCCCC
TCATCTAACGCCACAGAAGTGGAGTCTCAAAGGAACACCTCCTGAGGAGCTGGGGCTGAG
TTAATTGTAGACAGGCCTGTTTGGTTCCTGCTTATCCCCACCCTGAGGCACCAGCTTCCT
CACCATCTCTGCTCCATTGGGGTGTAGTCCAGTTTTTCTTACATATGTAAGAGTCAAGTC
TACCCTCTTGCCTCCTGTTCTGGGAGTGGAGAGGAAATCAGTGATACTGGAGGTGACTGG
TTGCTATGTCATGGGTTTGAGTTGCATTTGGCTGTAACACAATCTTGTTAGAAAAAGTAT
GTGGGGAGAGGCAGAGAGGGAGAAGGCCTCTCCCCACACACACAGTGAGACACATCTTAA
TGGGTCTCTAATCTTGTTTGTAGGGATTCTGTTGGTTGAATGCCTGAAGAGGGAGGTGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-237, + strand, RNAz p=0.527387

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-237, + strand, RNAz p=0.527387

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_201567, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_201567, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-840, gnl|bosTau2|chr22 (40845060-40844225)
               

               
               3-840, gnl|Hg17|chr3 (48174583-48173753)
               

               
               3-840, gnl|Mm7|chr9 (109590084-109590843)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-840, gnl|bosTau2|chr22 (40845060-40844225)
               

               
               3-840, gnl|Hg17|chr3 (48174583-48173753)
               

               
               3-840, gnl|Mm7|chr9 (109590084-109590843)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               ebs (0.118301)

	3-840, gnl\|bosTau2\|chr22 (40845060-40844225)
	3-840, gnl\|Hg17\|chr3 (48174583-48173753)
	3-840, gnl\|Mm7\|chr9 (109590084-109590843)