Non-Coding RNA Search

Ss1.1-Mixc-0032l16.5

Sequence:


               
               TGATTCATGTTTGAATTTACGGTTTAAAGCCCCCAGAGTGAAATTATGCTCTGAACTTCT
AACCCTCAAAACAAGCTGAATGTCCCTATGTACTTCCTGTGCCCAAATTTAATTTTAAAT
AAACAGCAGTAATATACTAGATATGAATAATTTGGGTCAAGCGCTCCTGTTAAACTGGAG
AAAATTATTTAACCCCCACCCCAATCCCCAAAGAAAGGACTGCCAATGAATGTGTGTGTG
TGTGTGTGTGTGTGCGCGCGCGTGTGTATACACACATATCTATGTGTGTGTATATATATA
CACTACATATGTATACACACAGATATAGATAGGTAGATATAGATACATATATATCTCAAA
AAAGGCAATAACAAAAATACCAAACTATGCTTGCATTGTGGCAGCAGAATAAGAGTGTTA
AAAGTGAAGAGGAAAGTGGATAAGATCTATTACAGTTTTAAATGACTATGATACTAGCTT
AACTTTTACCAGACTTGCCTGTAACTCCCTTCCAGACAGACAGACTTCTTTTAAGAGGAA
GGAGTTCCTTACACAAAATGCTTTGTGTTCACATAAATCTGTACTATTCAGAACAAAACC
AGTTCTGCTGGCAGAGATTGTGGGTTCGCAGGGACATTTAAGCTTTCATTAAACTGGAAA
GCAATCAAGTCTTTATGTCTACAAATTATACATTTAATAGTTCCACAAATTTGGCAAAGT
TCATGATGACATCTAAGATGTCTTCACCAAATCGTAGACATAAATATGGAAATCATCATC
AAACTTGATGAAATAGACAGATGGTCCGGCTTCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTCATGTTTGAATTTACGGTTTAAAGCCCCCAGAGTGAAATTATGCTCTGAACTTCT
AACCCTCAAAACAAGCTGAATGTCCCTATGTACTTCCTGTGCCCAAATTTAATTTTAAAT
AAACAGCAGTAATATACTAGATATGAATAATTTGGGTCAAGCGCTCCTGTTAAACTGGAG
AAAATTATTTAACCCCCACCCCAATCCCCAAAGAAAGGACTGCCAATGAATGTGTGTGTG
TGTGTGTGTGTGTGCGCGCGCGTGTGTATACACACATATCTATGTGTGTGTATATATATA
CACTACATATGTATACACACAGATATAGATAGGTAGATATAGATACATATATATCTCAAA
AAAGGCAATAACAAAAATACCAAACTATGCTTGCATTGTGGCAGCAGAATAAGAGTGTTA
AAAGTGAAGAGGAAAGTGGATAAGATCTATTACAGTTTTAAATGACTATGATACTAGCTT
AACTTTTACCAGACTTGCCTGTAACTCCCTTCCAGACAGACAGACTTCTTTTAAGAGGAA
GGAGTTCCTTACACAAAATGCTTTGTGTTCACATAAATCTGTACTATTCAGAACAAAACC
AGTTCTGCTGGCAGAGATTGTGGGTTCGCAGGGACATTTAAGCTTTCATTAAACTGGAAA
GCAATCAAGTCTTTATGTCTACAAATTATACATTTAATAGTTCCACAAATTTGGCAAAGT
TCATGATGACATCTAAGATGTCTTCACCAAATCGTAGACATAAATATGGAAATCATCATC
AAACTTGATGAAATAGACAGATGGTCCGGCTTCTAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               194-376, + strand, RNAz p=0.999028
               

               
               518-795, + strand, RNAz p=0.962286

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-376, + strand, RNAz p=0.999028
               

               
               518-795, + strand, RNAz p=0.962286

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               244-326, + strand, RNAmicro p=0.985711
               

               
               262-378, - strand, RNAmicro p=0.981003

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               244-326, + strand, RNAmicro p=0.985711
               

               
               262-378, - strand, RNAmicro p=0.981003

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-376, gnl|bosTau2|chr14 (46409908-46409555)
               

               
               1-376, gnl|Hg17|chr9 (88320458-88320104)
               

               
               1-376, gnl|Mm7|chr13 (50181477-50181153)
               


               
               478-816, gnl|bosTau2|chr14 (46408562-46408231)
               

               
               478-816, gnl|Hg17|chr9 (88319988-88319663)
               

               
               478-816, gnl|Mm7|chr13 (50180988-50180685)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-376, gnl|bosTau2|chr14 (46409908-46409555)
               

               
               1-376, gnl|Hg17|chr9 (88320458-88320104)
               

               
               1-376, gnl|Mm7|chr13 (50181477-50181153)
               


               
               478-816, gnl|bosTau2|chr14 (46408562-46408231)
               

               
               478-816, gnl|Hg17|chr9 (88319988-88319663)
               

               
               478-816, gnl|Mm7|chr13 (50180988-50180685)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	194-376, + strand, RNAz p=0.999028
	518-795, + strand, RNAz p=0.962286

	244-326, + strand, RNAmicro p=0.985711
	262-378, - strand, RNAmicro p=0.981003

	1-376, gnl\|bosTau2\|chr14 (46409908-46409555)
	1-376, gnl\|Hg17\|chr9 (88320458-88320104)
	1-376, gnl\|Mm7\|chr13 (50181477-50181153)

	478-816, gnl\|bosTau2\|chr14 (46408562-46408231)
	478-816, gnl\|Hg17\|chr9 (88319988-88319663)
	478-816, gnl\|Mm7\|chr13 (50180988-50180685)