Non-Coding RNA Search

Ss1.1-Mixc-0032m02.3

Sequence:


               
               TTAAGATAGGTCTTCCCCGTCTTAACCCACCTGATCACCTGATCATCCTCCCTATTCTGG
TTACCACTGTCCTTTCCTGCCTCTGCTACCACAGTGCTTGAATGAATGCTTCCTACCCAC
TGTGTTGTCGAACTGATGTGGGATGCCAGAAATTAGGATGTGACTTTAAATAGAGTCGAT
ATTTTGCAGAGGTTTGTCAACAACAGGGATAAACATTAGGAGGTGACCCCCAGACACACC
TCCTGTCCGAGGCCCCAGGTACCACTGCACTTTAAATAATTGGAGACTGCAACAGGAGGG
TAAAGGCAGACCTAGGGCAGAGCTTCACTGTTTTTTCCAGAACAGTTCGTTTTTTATAGC
TGTTAGTCCCTCTCTCTTGGAGATTTTTTGGGCACTGACCTTGTTCTGTTGTGTCCCAGC
TTCTAGATCTCTACTACTACTACTACCACTAATAGCTCGCATTTATTGAGCACTCATTAT
GGGGTGAGTACTCAGCTGAGAGTTTTGCAAGTAGTAGATTATTTGGTCCTCTCACCAACC
CTCTGAAGTAGATACTGTCACTACCCACATTTTTGCAGATGAGCAAACAGAAGTTTAGAG
GGGTTTAATAACTTGCCCAAGGTGACAGCTAATAAAAGATGAAGGCAGGTCTTCAATACT
GGTATACCTTCAAAGCCTGTTCTCTTTTCCATTATTCCATAAGGTTTGTTTTATAATTTA
TATACACTTATTATCTCCTCAACTAGATTGTAAGCACTTGGAAACGTGATTTCATGTCTT
TGTATCACACAGTGCCTTGCAAATAATAGGTGCTCAATAAATATTTATCTGAATTAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGATAGGTCTTCCCCGTCTTAACCCACCTGATCACCTGATCATCCTCCCTATTCTGG
TTACCACTGTCCTTTCCTGCCTCTGCTACCACAGTGCTTGAATGAATGCTTCCTACCCAC
TGTGTTGTCGAACTGATGTGGGATGCCAGAAATTAGGATGTGACTTTAAATAGAGTCGAT
ATTTTGCAGAGGTTTGTCAACAACAGGGATAAACATTAGGAGGTGACCCCCAGACACACC
TCCTGTCCGAGGCCCCAGGTACCACTGCACTTTAAATAATTGGAGACTGCAACAGGAGGG
TAAAGGCAGACCTAGGGCAGAGCTTCACTGTTTTTTCCAGAACAGTTCGTTTTTTATAGC
TGTTAGTCCCTCTCTCTTGGAGATTTTTTGGGCACTGACCTTGTTCTGTTGTGTCCCAGC
TTCTAGATCTCTACTACTACTACTACCACTAATAGCTCGCATTTATTGAGCACTCATTAT
GGGGTGAGTACTCAGCTGAGAGTTTTGCAAGTAGTAGATTATTTGGTCCTCTCACCAACC
CTCTGAAGTAGATACTGTCACTACCCACATTTTTGCAGATGAGCAAACAGAAGTTTAGAG
GGGTTTAATAACTTGCCCAAGGTGACAGCTAATAAAAGATGAAGGCAGGTCTTCAATACT
GGTATACCTTCAAAGCCTGTTCTCTTTTCCATTATTCCATAAGGTTTGTTTTATAATTTA
TATACACTTATTATCTCCTCAACTAGATTGTAAGCACTTGGAAACGTGATTTCATGTCTT
TGTATCACACAGTGCCTTGCAAATAATAGGTGCTCAATAAATATTTATCTGAATTAATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               342-461, + strand, RNAz p=0.600294

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-461, + strand, RNAz p=0.600294

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR749650, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR749650, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-838, gnl|bosTau2|chr10 (9009762-9008944)
               

               
               3-838, gnl|Hg17|chr2 (95269773-95270592)
               

               
               3-838, gnl|Mm7|chr2 (127317764-127316385)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-838, gnl|bosTau2|chr10 (9009762-9008944)
               

               
               3-838, gnl|Hg17|chr2 (95269773-95270592)
               

               
               3-838, gnl|Mm7|chr2 (127317764-127316385)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bla (0.248694)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               liv (0.146284)

	3-838, gnl\|bosTau2\|chr10 (9009762-9008944)
	3-838, gnl\|Hg17\|chr2 (95269773-95270592)
	3-838, gnl\|Mm7\|chr2 (127317764-127316385)