Non-Coding RNA Search

Ss1.1-Mixc-0032n17.5

Sequence:


               
               CCAGCCCTTCCACTCACTTTCAGCCTTTGGGATGCTCCAAATCCTTCCCACACTTCTGGA
CACTCCCGAATCTGACTTCTGACATCCGCCTCAGGTTACCCTGATGCTAGAACTTCCAAG
AAAGGCTCAACCTGTCTGCAGTTTCAGGGAACAGGACTTTCCCCGGCTCTCCTTTTCTCA
TGCTTAACGTTGTCCCCCTAAGAGCCCCTTTCCTTAAATGATGCCCCAAAGGCACCTTCT
TCATAGACGGTGTTTCCCAGACAGTGTATCCCTTGCTATGTGCTAAGGTTTTAGGCAGTA
CAAGGACACTTATTTTTAAAGTTTTGTCTTTTCTGGCATTTTGCACATAAGCCAGTAAGT
CCAGATACTGCTGCTTGGCCAGGACATCGTTTATTTAGGTTAGAAGTATTGCCATTTTAA
AATAGAGGCTGTGCCTGAATGAAGGGACCCTGGGCTTTAAGGAGTTTGGGAAACGACATA
TCCACCTGGTCTGGGACCCCAGCTCGCCCTTTCCCGGCGTTCCTCGCCTCGCCACGTTCG
CGGGTGGAAAATCATTTCTCATATCTCATCCTGGCTCAAGGATGCGCTACCTCCCCCAGG
CCCAGAGACCACACCTGTCCCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCCCTTCCACTCACTTTCAGCCTTTGGGATGCTCCAAATCCTTCCCACACTTCTGGA
CACTCCCGAATCTGACTTCTGACATCCGCCTCAGGTTACCCTGATGCTAGAACTTCCAAG
AAAGGCTCAACCTGTCTGCAGTTTCAGGGAACAGGACTTTCCCCGGCTCTCCTTTTCTCA
TGCTTAACGTTGTCCCCCTAAGAGCCCCTTTCCTTAAATGATGCCCCAAAGGCACCTTCT
TCATAGACGGTGTTTCCCAGACAGTGTATCCCTTGCTATGTGCTAAGGTTTTAGGCAGTA
CAAGGACACTTATTTTTAAAGTTTTGTCTTTTCTGGCATTTTGCACATAAGCCAGTAAGT
CCAGATACTGCTGCTTGGCCAGGACATCGTTTATTTAGGTTAGAAGTATTGCCATTTTAA
AATAGAGGCTGTGCCTGAATGAAGGGACCCTGGGCTTTAAGGAGTTTGGGAAACGACATA
TCCACCTGGTCTGGGACCCCAGCTCGCCCTTTCCCGGCGTTCCTCGCCTCGCCACGTTCG
CGGGTGGAAAATCATTTCTCATATCTCATCCTGGCTCAAGGATGCGCTACCTCCCCCAGG
CCCAGAGACCACACCTGTCCCAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-265, - strand, RNAz p=0.969871
               

               
               466-579, - strand, RNAz p=0.604666

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-265, - strand, RNAz p=0.969871
               

               
               466-579, - strand, RNAz p=0.604666

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr18 (49177271-49176636)
               

               
               1-624, gnl|Hg17|chr19 (55508868-55508177)
               

               
               1-624, gnl|Mm7|chr7 (40777421-40778120)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr18 (49177271-49176636)
               

               
               1-624, gnl|Hg17|chr19 (55508868-55508177)
               

               
               1-624, gnl|Mm7|chr7 (40777421-40778120)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	81-265, - strand, RNAz p=0.969871
	466-579, - strand, RNAz p=0.604666

	1-624, gnl\|bosTau2\|chr18 (49177271-49176636)
	1-624, gnl\|Hg17\|chr19 (55508868-55508177)
	1-624, gnl\|Mm7\|chr7 (40777421-40778120)