Non-Coding RNA Search

Ss1.1-Mixc-0032p03.5

Sequence:


               
               TGAAGAATGTTACGAGCTCATTGTTGGTTCGTGTAATGAATTTCGCGTCATAGTGACTCT
TTTTATTGGTACGTAGATAACTATGCACAGCCCCCCACTGTAAGGGTTCGCACTGAAACC
TACTGTGAAATGTTTCTGGTTCAGGTCTTGGCAAGCCCGACATTTTTGAGGACCACACAC
CTACGGCTTTGACAATTGTAAATCCCCGTACAAATGTGACAGTGTGTGCAGAATGTAAAA
TTCAGAGCTTCGCGTAGTGACACTGATGTGGGAACTGGTAAACGGAAATCGGGACGCTCA
CGGAACTCTCTTCGCCCTCAGATCACGTTCCGACACGAGTCGGCCTAAGCGTGCTTTTTG
TGTCAGGCCCACAGTTTTGCCAGTGGCATGGCCTTAGTGTTTCCAGATCTGGCTTGGACT
CGAGACCAGTGCCTAACTTCAGAAGCTCTTCACTTACAGATCAGGCCTTCATCACCGAAG
AGGAAGGACCTCAGGCGGAAAACTTAACTTGTTAGTGGCCCCGCGTGGAACTGGCCGTCT
TGATGGAGCTGGCTTGGAGGTCCTTTGTCATATTGGCATTTCCCCACCCGACGGTGAGTT
TATGGTCATTAAGGCTAGAGAAAATGTCATTTCAAGCCACATTGACTTGAACTTTAATCG
ACGTGTGCTAAGCAGCAGCGACCTGATGTGGAAATGCCATCTTATCGCTAAGTGTCGTGT
GGTACGGCTGTGTCTCACATTCATAGATTAGGTGTTGGATCATTGTTACGAGACTAAACC
ATGTCAGTGATGTTTTGAAATTCTTTGCTTGGCAGAACGTGTGTAAATATGCTGATTGGT
GCAAAGTTCATGAAGGGTCAAAGGCAAGGCTCCTCCTTAGGTTTTACCTTTCCCAGAGCT
CACTGAGGAGTCATCATTGGACCACTGGAGGTGGGGTTTGCCTTGTTAAGACAGTGGGAA
ATACGAACCTTTGAAACAATCTGTGACCTGGAAATTTAACAATAAAAGCAGATGCTTTGC
TTCTTTTGAAAGAGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGAATGTTACGAGCTCATTGTTGGTTCGTGTAATGAATTTCGCGTCATAGTGACTCT
TTTTATTGGTACGTAGATAACTATGCACAGCCCCCCACTGTAAGGGTTCGCACTGAAACC
TACTGTGAAATGTTTCTGGTTCAGGTCTTGGCAAGCCCGACATTTTTGAGGACCACACAC
CTACGGCTTTGACAATTGTAAATCCCCGTACAAATGTGACAGTGTGTGCAGAATGTAAAA
TTCAGAGCTTCGCGTAGTGACACTGATGTGGGAACTGGTAAACGGAAATCGGGACGCTCA
CGGAACTCTCTTCGCCCTCAGATCACGTTCCGACACGAGTCGGCCTAAGCGTGCTTTTTG
TGTCAGGCCCACAGTTTTGCCAGTGGCATGGCCTTAGTGTTTCCAGATCTGGCTTGGACT
CGAGACCAGTGCCTAACTTCAGAAGCTCTTCACTTACAGATCAGGCCTTCATCACCGAAG
AGGAAGGACCTCAGGCGGAAAACTTAACTTGTTAGTGGCCCCGCGTGGAACTGGCCGTCT
TGATGGAGCTGGCTTGGAGGTCCTTTGTCATATTGGCATTTCCCCACCCGACGGTGAGTT
TATGGTCATTAAGGCTAGAGAAAATGTCATTTCAAGCCACATTGACTTGAACTTTAATCG
ACGTGTGCTAAGCAGCAGCGACCTGATGTGGAAATGCCATCTTATCGCTAAGTGTCGTGT
GGTACGGCTGTGTCTCACATTCATAGATTAGGTGTTGGATCATTGTTACGAGACTAAACC
ATGTCAGTGATGTTTTGAAATTCTTTGCTTGGCAGAACGTGTGTAAATATGCTGATTGGT
GCAAAGTTCATGAAGGGTCAAAGGCAAGGCTCCTCCTTAGGTTTTACCTTTCCCAGAGCT
CACTGAGGAGTCATCATTGGACCACTGGAGGTGGGGTTTGCCTTGTTAAGACAGTGGGAA
ATACGAACCTTTGAAACAATCTGTGACCTGGAAATTTAACAATAAAAGCAGATGCTTTGC
TTCTTTTGAAAGAGAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-1034, gnl|bosTau2|chr18 (10753401-10754413)
               

               
               15-1034, gnl|Hg17|chr16 (82714683-82713384)
               

               
               15-1034, gnl|Mm7|chr8 (118184404-118183462)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1034, gnl|bosTau2|chr18 (10753401-10754413)
               

               
               15-1034, gnl|Hg17|chr16 (82714683-82713384)
               

               
               15-1034, gnl|Mm7|chr8 (118184404-118183462)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ece (0.229305)
               

               
               sin (0.174948)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	15-1034, gnl\|bosTau2\|chr18 (10753401-10754413)
	15-1034, gnl\|Hg17\|chr16 (82714683-82713384)
	15-1034, gnl\|Mm7\|chr8 (118184404-118183462)

	ece (0.229305)
	sin (0.174948)
	hyp (0.142837)
	ova (0.129132)
	bla (0.124347)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	eje (0.0988338)