Ss1.1-Mixc-0033,o21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGACCATCGAAAGCCGTGGATCTTGGGCTGTGAAAAGCCTGCCATGTGGAAATGCTGTT TCTTATCCTTCCTCTCTGGGAGTGAGGATGGAAGACATAGTCTGCACTTACTTGAGGGAC CCTTGATGGAAAGAATGCTGCTGGTGGTGGAACAGTTGTGACCTCAGGACTGGCTCTGCA GGTGGATTGGCTGGCACCTGGCCCCAATCCCCAGCTCTGGGGCCATGTGTCCCTCCTACC CCTGTGGCCTTTTCATACTCGCCCACCAGGTCCTGGCTTCTTAGCCTTCCTGTGAGGGAT ATTCCTGAACTGTGGTCCCTAGGATGGGCTCCTGGTCCCTAGGGTGAACCTTCTCACACA CTGGCCATAAGTCAGCCTGCTACCATGGGTGGCCTAGCTGTCCAGACAGCCTGACAGTAG CTTTCTAGGGGGGCCCAGTTCCCCCTGCAGGCAGGGGTGAGTTGTGTTCTCCATGGTTCC CAGGGCCGGGGGCATTCACTCCTACCTCCCTTACCTCTAAGAACAGCTTCACTCAGGACT GGGCAGCAGATGGCCCCCTGGTTCTAGGGGCTGTGTTCCAGGAGCCCTAATCTCCTTGGT TGGGCTGTTGCCCACGTTATTGATGCTGGCTCCCTTTGCCCTGGGACTGTGGCTGAAAGA TGAGAGCAGGGCCTGCTGCCATGGCCCTTTAGGTACTCATGAAGAAGGAGAATTCAAGGA AGCAGCCAAGGCCAATCAGAGCTGCCCTGAGCTGCCTTCTTGCCAACCCACCACCACATT GCCACCCTGCCCTAAGGTCTCTAGCCCCGATGTGGGCTGGCACAGGCCTGAGAGGAGGTA GGAATCTTGCCCACCCTGCCTAGCACCTGTCCCCACCCCTGGCAGCTTAGTGGCATTTAG TCAGCAGGGACTAGCCCAGAAACTTGAGTGGGCCCCTGAGGGAGCCAGGTGCCTGGGGGT CCCCTGAGGGTTTTCTTCTGACTCTAGAGGTGCTGTGTGGGTCTCCCTGTGATAGCAGGA TGGAGAATCTGGATCTGCCTTGGTGGCAGTGGTTTCCAGATGGATGACAGCCACAGTCAG GCTGGACTGTGCTGTTCTCCTCCAAGGTTTCTGTGGAGTGGGACTTTCTCTGTTGCATTC CTACCCAGCATCTGTCTTTCCCTTTGTTCCTGAGTGGTAGACCCCTCATGGGGCTTTGAG CAGGCTGTACCTCGGTTCTGGCAATAAAAGTATTCTGAATGTTGTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGACCATCGAAAGCCGTGGATCTTGGGCTGTGAAAAGCCTGCCATGTGGAAATGCTGTT TCTTATCCTTCCTCTCTGGGAGTGAGGATGGAAGACATAGTCTGCACTTACTTGAGGGAC CCTTGATGGAAAGAATGCTGCTGGTGGTGGAACAGTTGTGACCTCAGGACTGGCTCTGCA GGTGGATTGGCTGGCACCTGGCCCCAATCCCCAGCTCTGGGGCCATGTGTCCCTCCTACC CCTGTGGCCTTTTCATACTCGCCCACCAGGTCCTGGCTTCTTAGCCTTCCTGTGAGGGAT ATTCCTGAACTGTGGTCCCTAGGATGGGCTCCTGGTCCCTAGGGTGAACCTTCTCACACA CTGGCCATAAGTCAGCCTGCTACCATGGGTGGCCTAGCTGTCCAGACAGCCTGACAGTAG CTTTCTAGGGGGGCCCAGTTCCCCCTGCAGGCAGGGGTGAGTTGTGTTCTCCATGGTTCC CAGGGCCGGGGGCATTCACTCCTACCTCCCTTACCTCTAAGAACAGCTTCACTCAGGACT GGGCAGCAGATGGCCCCCTGGTTCTAGGGGCTGTGTTCCAGGAGCCCTAATCTCCTTGGT TGGGCTGTTGCCCACGTTATTGATGCTGGCTCCCTTTGCCCTGGGACTGTGGCTGAAAGA TGAGAGCAGGGCCTGCTGCCATGGCCCTTTAGGTACTCATGAAGAAGGAGAATTCAAGGA AGCAGCCAAGGCCAATCAGAGCTGCCCTGAGCTGCCTTCTTGCCAACCCACCACCACATT GCCACCCTGCCCTAAGGTCTCTAGCCCCGATGTGGGCTGGCACAGGCCTGAGAGGAGGTA GGAATCTTGCCCACCCTGCCTAGCACCTGTCCCCACCCCTGGCAGCTTAGTGGCATTTAG TCAGCAGGGACTAGCCCAGAAACTTGAGTGGGCCCCTGAGGGAGCCAGGTGCCTGGGGGT CCCCTGAGGGTTTTCTTCTGACTCTAGAGGTGCTGTGTGGGTCTCCCTGTGATAGCAGGA TGGAGAATCTGGATCTGCCTTGGTGGCAGTGGTTTCCAGATGGATGACAGCCACAGTCAG GCTGGACTGTGCTGTTCTCCTCCAAGGTTTCTGTGGAGTGGGACTTTCTCTGTTGCATTC CTACCCAGCATCTGTCTTTCCCTTTGTTCCTGAGTGGTAGACCCCTCATGGGGCTTTGAG CAGGCTGTACCTCGGTTCTGGCAATAAAAGTATTCTGAATGTTGTAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 168-383, - strand, RNAz p=0.997566 | |
| 190-383, - strand, RNAz p=0.950094 | |
| 884-1029, + strand, RNAz p=0.991644 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 168-383, - strand, RNAz p=0.997566 | |
| 190-383, - strand, RNAz p=0.950094 | |
| 884-1029, + strand, RNAz p=0.991644 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 185-257, + strand, RNAmicro p=0.99868 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 168-383, CJ018968 full-length enriched swine cDNA library, adult spleen Sus (dbj|CJ018968.1|), blast E-value=0, identity=100% | |
| 191-367, 211001 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE756764.1|), blast E-value=1e-36, identity=86.44% | |
| 238-320, LIB30320_041_E12_SP6_1 LIB30320 Canis familiaris cDNA clone (gb|DN265674.1|), blast E-value=3e-16, identity=89.16% | |
| 184-320, LIB3934-053-A1-K1-G4 LIB3934 Canis familiaris cDNA clone (gb|DN393351.1|), blast E-value=2e-20, identity=85.51% | |
| 191-367, 000927BEMN026624HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY113705.1|), blast E-value=1e-36, identity=86.44% | |
| 191-367, 010125BEMN054810HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY143250.1|), blast E-value=1e-36, identity=86.44% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 168-383, CJ018968 full-length enriched swine cDNA library, adult spleen Sus (dbj|CJ018968.1|), blast E-value=0, identity=100% | |
| 191-367, 211001 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE756764.1|), blast E-value=1e-36, identity=86.44% | |
| 238-320, LIB30320_041_E12_SP6_1 LIB30320 Canis familiaris cDNA clone (gb|DN265674.1|), blast E-value=3e-16, identity=89.16% | |
| 184-320, LIB3934-053-A1-K1-G4 LIB3934 Canis familiaris cDNA clone (gb|DN393351.1|), blast E-value=2e-20, identity=85.51% | |
| 191-367, 000927BEMN026624HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY113705.1|), blast E-value=1e-36, identity=86.44% | |
| 191-367, 010125BEMN054810HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY143250.1|), blast E-value=1e-36, identity=86.44% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_012320, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-383, gnl|bosTau2|chr18 (14721250-14720884) | |
| 1-383, gnl|canFam2|chr5 (84279140-84278804) | |
| 1-383, gnl|dasNov1|scaffold_3005 (36398-36697) | |
| 1-383, gnl|echTel1|scaffold_49849 (2744-2525) | |
| 1-383, gnl|hg17|chr16 (66851076-66851400) | |
| 1-383, gnl|Hg17|chr16 (66851153-66851548) | |
| 1-383, gnl|loxAfr1|scaffold_61580 (5346-5045) | |
| 1-383, gnl|mm7|chr8 (104762209-104762515) | |
| 1-383, gnl|Mm7|chr8 (104762288-104762651) | |
| 1-383, gnl|oryCun1|scaffold_206981 (44434-44742) | |
| 1-383, gnl|panTro1|chr18 (61163172-61163496) | |
| 1-383, gnl|rheMac2|chr20 (66603815-66604136) | |
| 1-383, gnl|rn3|chr19 (36019053-36019367) | |
| 389-1046, gnl|bosTau2|chr18 (14720850-14720193) | |
| 389-1046, gnl|Hg17|chr16 (66851582-66852226) | |
| 389-1046, gnl|Mm7|chr8 (104762685-104763346) | |
| 1069-1248, gnl|bosTau2|chr18 (14720137-14719958) | |
| 1069-1248, gnl|canFam2|chr5 (84278309-84277785) | |
| 1069-1248, gnl|canFam2|chr5 (84278131-84277785) | |
| 1069-1248, gnl|dasNov1|scaffold_3005 (37300-37820) | |
| 1069-1248, gnl|dasNov1|scaffold_3005 (37488-37820) | |
| 1069-1248, gnl|echTel1|scaffold_49849 (2086-1549) | |
| 1069-1248, gnl|hg17|chr10 (6117170-6117480) | |
| 1069-1248, gnl|hg17|chr16 (66851905-66852408) | |
| 1069-1248, gnl|Hg17|chr16 (66852290-66852463) | |
| 1069-1248, gnl|loxAfr1|scaffold_61580 (4520-3998) | |
| 1069-1248, gnl|loxAfr1|scaffold_61580 (4356-3998) | |
| 1069-1248, gnl|mm7|chr8 (104763004-104763516) | |
| 1069-1248, gnl|mm7|chr8 (104763193-104763516) | |
| 1069-1248, gnl|Mm7|chr8 (104763397-104763571) | |
| 1069-1248, gnl|panTro1|chr18 (61164001-61164504) | |
| 1069-1248, gnl|panTro1|chr8 (6201752-6202062) | |
| 1069-1248, gnl|rheMac2|chr20 (66604718-66605173) | |
| 1069-1248, gnl|rheMac2|chr9 (6317617-6317926) | |
| 1069-1248, gnl|rn3|chr19 (36019862-36020358) | |
| 1069-1248, gnl|rn3|chr19 (36020048-36020358) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-383, gnl|bosTau2|chr18 (14721250-14720884) | |
| 1-383, gnl|canFam2|chr5 (84279140-84278804) | |
| 1-383, gnl|dasNov1|scaffold_3005 (36398-36697) | |
| 1-383, gnl|echTel1|scaffold_49849 (2744-2525) | |
| 1-383, gnl|hg17|chr16 (66851076-66851400) | |
| 1-383, gnl|Hg17|chr16 (66851153-66851548) | |
| 1-383, gnl|loxAfr1|scaffold_61580 (5346-5045) | |
| 1-383, gnl|mm7|chr8 (104762209-104762515) | |
| 1-383, gnl|Mm7|chr8 (104762288-104762651) | |
| 1-383, gnl|oryCun1|scaffold_206981 (44434-44742) | |
| 1-383, gnl|panTro1|chr18 (61163172-61163496) | |
| 1-383, gnl|rheMac2|chr20 (66603815-66604136) | |
| 1-383, gnl|rn3|chr19 (36019053-36019367) | |
| 389-1046, gnl|bosTau2|chr18 (14720850-14720193) | |
| 389-1046, gnl|Hg17|chr16 (66851582-66852226) | |
| 389-1046, gnl|Mm7|chr8 (104762685-104763346) | |
| 1069-1248, gnl|bosTau2|chr18 (14720137-14719958) | |
| 1069-1248, gnl|canFam2|chr5 (84278309-84277785) | |
| 1069-1248, gnl|canFam2|chr5 (84278131-84277785) | |
| 1069-1248, gnl|dasNov1|scaffold_3005 (37300-37820) | |
| 1069-1248, gnl|dasNov1|scaffold_3005 (37488-37820) | |
| 1069-1248, gnl|echTel1|scaffold_49849 (2086-1549) | |
| 1069-1248, gnl|hg17|chr10 (6117170-6117480) | |
| 1069-1248, gnl|hg17|chr16 (66851905-66852408) | |
| 1069-1248, gnl|Hg17|chr16 (66852290-66852463) | |
| 1069-1248, gnl|loxAfr1|scaffold_61580 (4520-3998) | |
| 1069-1248, gnl|loxAfr1|scaffold_61580 (4356-3998) | |
| 1069-1248, gnl|mm7|chr8 (104763004-104763516) | |
| 1069-1248, gnl|mm7|chr8 (104763193-104763516) | |
| 1069-1248, gnl|Mm7|chr8 (104763397-104763571) | |
| 1069-1248, gnl|panTro1|chr18 (61164001-61164504) | |
| 1069-1248, gnl|panTro1|chr8 (6201752-6202062) | |
| 1069-1248, gnl|rheMac2|chr20 (66604718-66605173) | |
| 1069-1248, gnl|rheMac2|chr9 (6317617-6317926) | |
| 1069-1248, gnl|rn3|chr19 (36019862-36020358) | |
| 1069-1248, gnl|rn3|chr19 (36020048-36020358) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| col (0.195008) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| csp (0.161186) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| csp (0.161186) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |