Non-Coding RNA Search

Ss1.1-Mixc-0033a06.3

Sequence:


               
               AATTATCATTGTTTTGTCCTTTCTGTACCCTCGCCTACAATATAACACATTGACACTGTA
CTTACTTGCTATGTTGCGATATTTTGCTGCTGAATTTCAGGCTACTTATATTCTGCAGAA
AATTCATTGAGATACCTGCTGAAGAAGATAGTTGTAAAGATATTGTATCTCCTTTAATAT
ATCCCTGAAAATGTTATGTGGGTTTAGCGTTGTTTTTGTGGATAAGGAAAAAAATGCTTG
ACCTTGAAATATTTTCTACTTAAAAATTGTGGATGAAAACCCTCTCTCCCACAAAGGACT
TCCCATTTCCTTGTCTAAAGATTTTTTTAAAGTGTTCTGTGGCTGATTTACTAACAGTAA
CTGCCATTTTGTGTCTGTGGTAACAGAGTGAGTTGTAAAACAGTGGATGTTTTCATTGTG
TTCTCTTTGTGGATTGTCCTTCCTGCGGGTCATAGTCATACCTTCTGACGAAGTTGTGCC
AACACCAGCAACATTGTAATGGCCCTGTAGCCCTCAACTCTCTATTAACATAACTAAAAG
GTTGCACTCCAGGGTGAACCAAGCTAAAAGCCCATGCTTAAATAAAAATTTTGTCCAAAA
GCCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTATCATTGTTTTGTCCTTTCTGTACCCTCGCCTACAATATAACACATTGACACTGTA
CTTACTTGCTATGTTGCGATATTTTGCTGCTGAATTTCAGGCTACTTATATTCTGCAGAA
AATTCATTGAGATACCTGCTGAAGAAGATAGTTGTAAAGATATTGTATCTCCTTTAATAT
ATCCCTGAAAATGTTATGTGGGTTTAGCGTTGTTTTTGTGGATAAGGAAAAAAATGCTTG
ACCTTGAAATATTTTCTACTTAAAAATTGTGGATGAAAACCCTCTCTCCCACAAAGGACT
TCCCATTTCCTTGTCTAAAGATTTTTTTAAAGTGTTCTGTGGCTGATTTACTAACAGTAA
CTGCCATTTTGTGTCTGTGGTAACAGAGTGAGTTGTAAAACAGTGGATGTTTTCATTGTG
TTCTCTTTGTGGATTGTCCTTCCTGCGGGTCATAGTCATACCTTCTGACGAAGTTGTGCC
AACACCAGCAACATTGTAATGGCCCTGTAGCCCTCAACTCTCTATTAACATAACTAAAAG
GTTGCACTCCAGGGTGAACCAAGCTAAAAGCCCATGCTTAAATAAAAATTTTGTCCAAAA
GCCAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-604, gnl|bosTau2|chr4 (21787510-21788110)
               

               
               1-604, gnl|Hg17|chr7 (102706786-102706187)
               

               
               1-604, gnl|Mm7|chr5 (20923019-20922416)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-604, gnl|bosTau2|chr4 (21787510-21788110)
               

               
               1-604, gnl|Hg17|chr7 (102706786-102706187)
               

               
               1-604, gnl|Mm7|chr5 (20923019-20922416)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.543183)
               

               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-604, gnl\|bosTau2\|chr4 (21787510-21788110)
	1-604, gnl\|Hg17\|chr7 (102706786-102706187)
	1-604, gnl\|Mm7\|chr5 (20923019-20922416)

	fce (0.543183)
	cbe (0.239234)
	fbs (0.175346)
	rec (0.17307)
	ret (0.128733)
	bla (0.124347)
	ebs (0.118301)
	spc (0.113366)