Non-Coding RNA Search

Ss1.1-Mixc-0033b16.3

Sequence:


               
               GCGCGGCGGTGATTTTGTGCCAGGCTTCCCAGAGGCGCGCTGAAAAGCTGGCATGCTCGG
AAACTGGGGCTTAGGACACACATTCAAGCCCCCACCCCCGGGAGGGGAAGGGGCAGCGGC
AAGCTCAGGTCGGCGAAAGGATGGTGTGTGCTCGGGGGGAAGGGGCGAGCCCTGCCTGTC
GTTGGTGAGGGGCTGCTGCTGGGGAGGCTCTGAGGGTCAAAGCGGCTCCATGCCCACTGG
TGGGTGGAACGTGTTGAGGAGAACGCGGAGGTCGAGCCTGGCGGCAGCTAAGAACCTTTA
ACGTAGTATCTAACGTGAGATTTCATTTATCCCACACTGGGATTAATTCATTGGGGGCAG
CCTCGCAGGTCTGGCTCCTCCAGGAGCTGGGCAACCTTGACGGGCTTTTTGTCTTGCTGT
TCCAGCCCCTTCTCCCTTCCTCCTCCTCCAGATGCCTTTTCTCTGCCCCTCCTCGCCCGG
TACAGACATTTCCAGCGCAGGCTACCGCTCGTGGTTGCTATCGAATCCGCTTACCAGGAT
TTCAGCTCGGTTCCCCCTGGGGTGTTTTTTGAGGTGGGAGAGTTTTTCTCCCCTCCACGA
TGGGATTTTCATCCTATGCCAAAATGGACTTTAATTGATTTCTACTCACTTTAGCGTTTA
GTGACCAATTCCTTAGGCTTATTTTTGTGATAGTTCCTTTTTTCAAGTACATTATCTGTA
AAATGGAGAACGAGATTTTTACTCCCCTTCTGGAGCAGTTCATGACCAGTCCCTTGGTCA
CTTGGGTTAAAACGTTTGGACCTCTGGCTGCAGGAAATGTGACCAACCTGGACGAATATG
TGGCTTTGGTGGATGGGGTATTCTTGAACCAAGTTATGCTCCAAATTAATCCTAAATCGG
AGAGTCAGAGAGTAAATAAAAAAGTCAACAATGATGCCTCACTTAGAATTCATAATCTGT
CAATATTGGTGAGACAGATAAAATTTTATTACCAGGAGACTTTGCAGCAGTTGATCATGA
TGTCATTGCCAAATGTCTTGATCATTGGCAAAAATCCCTTTTCTGAACAAGGCACAGAAG
AAGTTAAAAAGTTGCTTTTACTTTTATTGGGTTGTGCAGTTCAGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGGCGGTGATTTTGTGCCAGGCTTCCCAGAGGCGCGCTGAAAAGCTGGCATGCTCGG
AAACTGGGGCTTAGGACACACATTCAAGCCCCCACCCCCGGGAGGGGAAGGGGCAGCGGC
AAGCTCAGGTCGGCGAAAGGATGGTGTGTGCTCGGGGGGAAGGGGCGAGCCCTGCCTGTC
GTTGGTGAGGGGCTGCTGCTGGGGAGGCTCTGAGGGTCAAAGCGGCTCCATGCCCACTGG
TGGGTGGAACGTGTTGAGGAGAACGCGGAGGTCGAGCCTGGCGGCAGCTAAGAACCTTTA
ACGTAGTATCTAACGTGAGATTTCATTTATCCCACACTGGGATTAATTCATTGGGGGCAG
CCTCGCAGGTCTGGCTCCTCCAGGAGCTGGGCAACCTTGACGGGCTTTTTGTCTTGCTGT
TCCAGCCCCTTCTCCCTTCCTCCTCCTCCAGATGCCTTTTCTCTGCCCCTCCTCGCCCGG
TACAGACATTTCCAGCGCAGGCTACCGCTCGTGGTTGCTATCGAATCCGCTTACCAGGAT
TTCAGCTCGGTTCCCCCTGGGGTGTTTTTTGAGGTGGGAGAGTTTTTCTCCCCTCCACGA
TGGGATTTTCATCCTATGCCAAAATGGACTTTAATTGATTTCTACTCACTTTAGCGTTTA
GTGACCAATTCCTTAGGCTTATTTTTGTGATAGTTCCTTTTTTCAAGTACATTATCTGTA
AAATGGAGAACGAGATTTTTACTCCCCTTCTGGAGCAGTTCATGACCAGTCCCTTGGTCA
CTTGGGTTAAAACGTTTGGACCTCTGGCTGCAGGAAATGTGACCAACCTGGACGAATATG
TGGCTTTGGTGGATGGGGTATTCTTGAACCAAGTTATGCTCCAAATTAATCCTAAATCGG
AGAGTCAGAGAGTAAATAAAAAAGTCAACAATGATGCCTCACTTAGAATTCATAATCTGT
CAATATTGGTGAGACAGATAAAATTTTATTACCAGGAGACTTTGCAGCAGTTGATCATGA
TGTCATTGCCAAATGTCTTGATCATTGGCAAAAATCCCTTTTCTGAACAAGGCACAGAAG
AAGTTAAAAAGTTGCTTTTACTTTTATTGGGTTGTGCAGTTCAGTGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53SF1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53SF1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               39-148, - strand, RNAz p=0.920191
               

               
               538-654, - strand, RNAz p=0.999697
               

               
               680-787, - strand, RNAz p=0.582499

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-148, - strand, RNAz p=0.920191
               

               
               538-654, - strand, RNAz p=0.999697
               

               
               680-787, - strand, RNAz p=0.582499

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-787, gnl|bosTau2|chr11 (20479727-20478922)
               

               
               1-787, gnl|Hg17|chr2 (55558604-55557802)
               

               
               1-787, gnl|Mm7|chr11 (29325704-29326418)
               


               
               887-996, gnl|bosTau2|chr11 (20450438-20450329)
               

               
               887-996, gnl|canFam2|chr10 (59418942-59419158)
               

               
               887-996, gnl|danRer3|chr17 (43619014-43619212)
               

               
               887-996, gnl|dasNov1|scaffold_53687 (6296-6511)
               

               
               887-996, gnl|echTel1|scaffold_241486 (4706-4914)
               

               
               887-996, gnl|fr1|chrUn (46944968-46944759)
               

               
               887-996, gnl|galGal2|chr3 (2287087-2286901)
               

               
               887-996, gnl|hg17|chr2 (55527520-55527727)
               

               
               887-996, gnl|Hg17|chr2 (55527673-55527564)
               

               
               887-996, gnl|mm7|chr11 (29352347-29352151)
               

               
               887-996, gnl|Mm7|chr11 (29352190-29352299)
               

               
               887-996, gnl|monDom2|scaffold_1 (18346305-18346503)
               

               
               887-996, gnl|oryCun1|scaffold_166168 (40915-40702)
               

               
               887-996, gnl|panTro1|chr12 (57683677-57683884)
               

               
               887-996, gnl|rheMac2|chr13 (55713900-55714106)
               

               
               887-996, gnl|rn3|chr14 (110433724-110433527)
               

               
               887-996, gnl|xenTro1|scaffold_234 (688073-687864)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-787, gnl|bosTau2|chr11 (20479727-20478922)
               

               
               1-787, gnl|Hg17|chr2 (55558604-55557802)
               

               
               1-787, gnl|Mm7|chr11 (29325704-29326418)
               


               
               887-996, gnl|bosTau2|chr11 (20450438-20450329)
               

               
               887-996, gnl|canFam2|chr10 (59418942-59419158)
               

               
               887-996, gnl|danRer3|chr17 (43619014-43619212)
               

               
               887-996, gnl|dasNov1|scaffold_53687 (6296-6511)
               

               
               887-996, gnl|echTel1|scaffold_241486 (4706-4914)
               

               
               887-996, gnl|fr1|chrUn (46944968-46944759)
               

               
               887-996, gnl|galGal2|chr3 (2287087-2286901)
               

               
               887-996, gnl|hg17|chr2 (55527520-55527727)
               

               
               887-996, gnl|Hg17|chr2 (55527673-55527564)
               

               
               887-996, gnl|mm7|chr11 (29352347-29352151)
               

               
               887-996, gnl|Mm7|chr11 (29352190-29352299)
               

               
               887-996, gnl|monDom2|scaffold_1 (18346305-18346503)
               

               
               887-996, gnl|oryCun1|scaffold_166168 (40915-40702)
               

               
               887-996, gnl|panTro1|chr12 (57683677-57683884)
               

               
               887-996, gnl|rheMac2|chr13 (55713900-55714106)
               

               
               887-996, gnl|rn3|chr14 (110433724-110433527)
               

               
               887-996, gnl|xenTro1|scaffold_234 (688073-687864)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	39-148, - strand, RNAz p=0.920191
	538-654, - strand, RNAz p=0.999697
	680-787, - strand, RNAz p=0.582499

	1-787, gnl\|bosTau2\|chr11 (20479727-20478922)
	1-787, gnl\|Hg17\|chr2 (55558604-55557802)
	1-787, gnl\|Mm7\|chr11 (29325704-29326418)

	887-996, gnl\|bosTau2\|chr11 (20450438-20450329)
	887-996, gnl\|canFam2\|chr10 (59418942-59419158)
	887-996, gnl\|danRer3\|chr17 (43619014-43619212)
	887-996, gnl\|dasNov1\|scaffold_53687 (6296-6511)
	887-996, gnl\|echTel1\|scaffold_241486 (4706-4914)
	887-996, gnl\|fr1\|chrUn (46944968-46944759)
	887-996, gnl\|galGal2\|chr3 (2287087-2286901)
	887-996, gnl\|hg17\|chr2 (55527520-55527727)
	887-996, gnl\|Hg17\|chr2 (55527673-55527564)
	887-996, gnl\|mm7\|chr11 (29352347-29352151)
	887-996, gnl\|Mm7\|chr11 (29352190-29352299)
	887-996, gnl\|monDom2\|scaffold_1 (18346305-18346503)
	887-996, gnl\|oryCun1\|scaffold_166168 (40915-40702)
	887-996, gnl\|panTro1\|chr12 (57683677-57683884)
	887-996, gnl\|rheMac2\|chr13 (55713900-55714106)
	887-996, gnl\|rn3\|chr14 (110433724-110433527)
	887-996, gnl\|xenTro1\|scaffold_234 (688073-687864)