Ss1.1-Mixc-0033d10.5
|
TGCGCTGATCCGCCATGGCAGCGGTGTTCGTGCTTCGGAGCTTGTATCGAGCGCGACACA
TCCTTCGCTGGCCGCTCGCGCAGCTGTCCTGGGCCCCAGGGCGTGGGCATCGGCTCACGC
CGACGGATGATGAGCTGTATCAGCGGACGCGAATATCTCTGCTGCAGCGCGAGTCCCCGC
AGGCGATGTACATCGACAGCTACAGCAGCCGCGGCTTCGTGGTCAATGGAAATCGCGTGC
TTGGGCCCTGCGCGCTGCTTCCGCACTCGGTGGTGCAGTGGAACGTAGGTTCCCACCAGG
ACATCACCGAAGGAAGCTTCTCTCTCTTTTGGATGCTGGAGCCCCGAATAGAGATTGTTG
TGGTGGGCACTGGAGACCGGACTGAGCGGCTGCAGCCCCAGGTGCTGCGAGCCATGAGGC
AGCGGGGCATCGCTGTGGAAGTGCAGGACACACCCAATGCCTGTGCCACTTTCAACTTCC
TGTGTCATGAAGGCCGGGTGACAGGAGCTGCTCTCATTCCCCCACCTGGAGGGGCTGCTC
TCACATCTTTGGCCCAAGTCTCAAAAAAATGAACCACCAGGAACCTTGCCACCCTTTGCA
GAGTGCAGGGGTTTCCAGTTTTTACTAGCTCCTCCCCTTTGGCACTGTAACAACTTGTCT
TTCTAGCCAGCAAATTAATAATTTAATCTACTTCTCTTCCAGTTTTTACTAGCTCCTCCC
CTTTGGCACTGTAACAACTTGTCTTTCTAGCCAGCAAATTAATAATTTAATCTACTTCTC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGCGCTGATCCGCCATGGCAGCGGTGTTCGTGCTTCGGAGCTTGTATCGAGCGCGACACA
TCCTTCGCTGGCCGCTCGCGCAGCTGTCCTGGGCCCCAGGGCGTGGGCATCGGCTCACGC
CGACGGATGATGAGCTGTATCAGCGGACGCGAATATCTCTGCTGCAGCGCGAGTCCCCGC
AGGCGATGTACATCGACAGCTACAGCAGCCGCGGCTTCGTGGTCAATGGAAATCGCGTGC
TTGGGCCCTGCGCGCTGCTTCCGCACTCGGTGGTGCAGTGGAACGTAGGTTCCCACCAGG
ACATCACCGAAGGAAGCTTCTCTCTCTTTTGGATGCTGGAGCCCCGAATAGAGATTGTTG
TGGTGGGCACTGGAGACCGGACTGAGCGGCTGCAGCCCCAGGTGCTGCGAGCCATGAGGC
AGCGGGGCATCGCTGTGGAAGTGCAGGACACACCCAATGCCTGTGCCACTTTCAACTTCC
TGTGTCATGAAGGCCGGGTGACAGGAGCTGCTCTCATTCCCCCACCTGGAGGGGCTGCTC
TCACATCTTTGGCCCAAGTCTCAAAAAAATGAACCACCAGGAACCTTGCCACCCTTTGCA
GAGTGCAGGGGTTTCCAGTTTTTACTAGCTCCTCCCCTTTGGCACTGTAACAACTTGTCT
TTCTAGCCAGCAAATTAATAATTTAATCTACTTCTCTTCCAGTTTTTACTAGCTCCTCCC
CTTTGGCACTGTAACAACTTGTCTTTCTAGCCAGCAAATTAATAATTTAATCTACTTCTC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
91-286, gnl|bosTau2|chr22 (40017381-40017576) |
|
91-286, gnl|Hg17|chr3 (49034782-49034977) |
|
91-286, gnl|Mm7|chr9 (108279418-108279223) |
| |
|
349-452, gnl|bosTau2|chr22 (40017891-40017994) |
|
349-452, gnl|canFam2|chr20 (43141293-43141173) |
|
349-452, gnl|dasNov1|scaffold_27263 (9528-9648) |
|
349-452, gnl|echTel1|scaffold_321446 (81205-81328) |
|
349-452, gnl|fr1|chrUn (163795319-163795199) |
|
349-452, gnl|hg17|chr3 (49035305-49035425) |
|
349-452, gnl|Hg17|chr3 (49035310-49035413) |
|
349-452, gnl|mm7|chr9 (108278935-108278824) |
|
349-452, gnl|Mm7|chr9 (108278931-108278828) |
|
349-452, gnl|monDom2|scaffold_5 (76391712-76391586) |
|
349-452, gnl|oryCun1|scaffold_207864 (68220-68340) |
|
349-452, gnl|panTro1|chr2 (50557368-50557488) |
|
349-452, gnl|rheMac2|chr2 (87435082-87434962) |
|
349-452, gnl|rn3|chr8 (113631784-113631670) |
|
349-452, gnl|tetNig1|chr11 (5719585-5719464) |
|
349-452, gnl|xenTro1|scaffold_72 (2459516-2459631) |
| |
|
453-714, gnl|bosTau2|chr22 (40018074-40018352) |
|
453-714, gnl|Hg17|chr3 (49035493-49035738) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
91-286, gnl|bosTau2|chr22 (40017381-40017576) |
|
91-286, gnl|Hg17|chr3 (49034782-49034977) |
|
91-286, gnl|Mm7|chr9 (108279418-108279223) |
| |
|
349-452, gnl|bosTau2|chr22 (40017891-40017994) |
|
349-452, gnl|canFam2|chr20 (43141293-43141173) |
|
349-452, gnl|dasNov1|scaffold_27263 (9528-9648) |
|
349-452, gnl|echTel1|scaffold_321446 (81205-81328) |
|
349-452, gnl|fr1|chrUn (163795319-163795199) |
|
349-452, gnl|hg17|chr3 (49035305-49035425) |
|
349-452, gnl|Hg17|chr3 (49035310-49035413) |
|
349-452, gnl|mm7|chr9 (108278935-108278824) |
|
349-452, gnl|Mm7|chr9 (108278931-108278828) |
|
349-452, gnl|monDom2|scaffold_5 (76391712-76391586) |
|
349-452, gnl|oryCun1|scaffold_207864 (68220-68340) |
|
349-452, gnl|panTro1|chr2 (50557368-50557488) |
|
349-452, gnl|rheMac2|chr2 (87435082-87434962) |
|
349-452, gnl|rn3|chr8 (113631784-113631670) |
|
349-452, gnl|tetNig1|chr11 (5719585-5719464) |
|
349-452, gnl|xenTro1|scaffold_72 (2459516-2459631) |
| |
|
453-714, gnl|bosTau2|chr22 (40018074-40018352) |
|
453-714, gnl|Hg17|chr3 (49035493-49035738) |
|
elu (0.770713) |
|
hlv (0.278513) |
|
cov (0.264306) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
hea (0.204499) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
cki (0.165235) |
|
nco (0.161734) |
|
cli (0.152812) |
|
cag (0.151194) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ova (0.129132) |
|
sug (0.127291) |
|
eru (0.120048) |
|
med (0.116252) |
|
eje (0.0988338) |
|
elu (0.770713) |
|
hlv (0.278513) |
|
cov (0.264306) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
hea (0.204499) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
cki (0.165235) |
|
nco (0.161734) |
|
cli (0.152812) |
|
cag (0.151194) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ova (0.129132) |
|
sug (0.127291) |
|
eru (0.120048) |
|
med (0.116252) |
|
eje (0.0988338) |
