Non-Coding RNA Search

Ss1.1-Mixc-0033d23.3

Sequence:


               
               GTGGCTTCCGTTGCTGTGCTCCACGTCCTGCCCGGCCTCCCAGTCCCACAGAGCAGGAGG
GGGCAGTGCCCCGGCGACCTGAAGATGCTCTGCTGCTTCCAGATTTGAGCCTCCACGTGC
CACCAGGCGGTGCCAGTTTCCTGCCGGACTGTGGGCAGCTGCGGGGTGAAGGGGAGGGCC
TATGTGGGACTGGATCAGAACCACTGCCAGAGCTGCTGTTCCCTTGGACCTGCCGGAACT
GTGGACAAGAGCTGGAGGAGGGGGAGGGGAGTCGGCTGGGGGCTGCCATGTGTGGGCGCT
GCATGCGAGGAGAGGCTGGAGGGGGTGCCAGTGGGGGACCCCAGGGCCCCAGTGACAAAG
GCTTTGCCTGCAGCCTCTGCCCCTTTGCCACTCACTATCCCAACCACTTGGCTCGGCACA
TGAAGACACACAGTGGTGAGAAGCCCTTTCGCTGTGCCCGCTGTCCTTACGCCTCTGCTC
ATCTGGATAATCTGAAACGGCACCAGCGTGTCCACACGGGAGAGAAGCCCTACAAGTGCC
CCCTCTGCCCCTATGCCTGTGGCAATCTGGCCAACCTCAAGCGTCACGGTCGAATCCACT
CTGGGGACAAACCTTTCCGGTGTAGCCTTTGCAACTACAGCTGCAACCAGAGCATGAACC
TCAAACGCCACATGCTGCGGCACACAGGCGAGAAGCCCTTCCGCTGTGCCACCTGCGCCT
ACACCACGGGCCACTGGGACAACTACAAACGCCACCAAAAGGTGCATGGCCATGGTGGGG
CAGGAGGGCCTGGCCTCTCTGCCTCTGAGGGCTGGGCCCCACCTCATAGTCCTCCCTCTG
TTTTGAGTTCTCGGGGTCCGACAGCCCTGGGTGCCCCTGGTAGCCGAGCTCTCCATACAG
ACTCACCCTGAACCAGGTCCTTCTCCCTCAGGGCCCTGCGGACGAGCCCTGACCCTCCTG
TCAGTTTTATACAGATGGACCAGACGCCACCTTCTTCCTTCTTCCCCCGCTGGCCAGGGG
CTCCACACAGACTAACGTAGGCACTATATGGACCAGCCCAAACCCCACGGGCAGGGGGCC
CATGTGGACCAGGGGGCCTTGCCTTGACTGATGCGCTTCATAAGCTCAGTGAGAGGGGCC
CTGGATTCACCTCCACTGCTCCCAAGGGTCATGGAGGAACTGGCTGGGGGTCTGCCCAGC
CTCGTACCTGTTTATTTAACTTATTTCAGTGCTTTATAATAAAGGAAACACTAACAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCTTCCGTTGCTGTGCTCCACGTCCTGCCCGGCCTCCCAGTCCCACAGAGCAGGAGG
GGGCAGTGCCCCGGCGACCTGAAGATGCTCTGCTGCTTCCAGATTTGAGCCTCCACGTGC
CACCAGGCGGTGCCAGTTTCCTGCCGGACTGTGGGCAGCTGCGGGGTGAAGGGGAGGGCC
TATGTGGGACTGGATCAGAACCACTGCCAGAGCTGCTGTTCCCTTGGACCTGCCGGAACT
GTGGACAAGAGCTGGAGGAGGGGGAGGGGAGTCGGCTGGGGGCTGCCATGTGTGGGCGCT
GCATGCGAGGAGAGGCTGGAGGGGGTGCCAGTGGGGGACCCCAGGGCCCCAGTGACAAAG
GCTTTGCCTGCAGCCTCTGCCCCTTTGCCACTCACTATCCCAACCACTTGGCTCGGCACA
TGAAGACACACAGTGGTGAGAAGCCCTTTCGCTGTGCCCGCTGTCCTTACGCCTCTGCTC
ATCTGGATAATCTGAAACGGCACCAGCGTGTCCACACGGGAGAGAAGCCCTACAAGTGCC
CCCTCTGCCCCTATGCCTGTGGCAATCTGGCCAACCTCAAGCGTCACGGTCGAATCCACT
CTGGGGACAAACCTTTCCGGTGTAGCCTTTGCAACTACAGCTGCAACCAGAGCATGAACC
TCAAACGCCACATGCTGCGGCACACAGGCGAGAAGCCCTTCCGCTGTGCCACCTGCGCCT
ACACCACGGGCCACTGGGACAACTACAAACGCCACCAAAAGGTGCATGGCCATGGTGGGG
CAGGAGGGCCTGGCCTCTCTGCCTCTGAGGGCTGGGCCCCACCTCATAGTCCTCCCTCTG
TTTTGAGTTCTCGGGGTCCGACAGCCCTGGGTGCCCCTGGTAGCCGAGCTCTCCATACAG
ACTCACCCTGAACCAGGTCCTTCTCCCTCAGGGCCCTGCGGACGAGCCCTGACCCTCCTG
TCAGTTTTATACAGATGGACCAGACGCCACCTTCTTCCTTCTTCCCCCGCTGGCCAGGGG
CTCCACACAGACTAACGTAGGCACTATATGGACCAGCCCAAACCCCACGGGCAGGGGGCC
CATGTGGACCAGGGGGCCTTGCCTTGACTGATGCGCTTCATAAGCTCAGTGAGAGGGGCC
CTGGATTCACCTCCACTGCTCCCAAGGGTCATGGAGGAACTGGCTGGGGGTCTGCCCAGC
CTCGTACCTGTTTATTTAACTTATTTCAGTGCTTTATAATAAAGGAAACACTAACAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8NDL8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8NDL8_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               242-441, - strand, RNAz p=0.785032
               

               
               682-997, - strand, RNAz p=0.968928
               

               
               1037-1258, + strand, RNAz p=0.943633

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-441, - strand, RNAz p=0.785032
               

               
               682-997, - strand, RNAz p=0.968928
               

               
               1037-1258, + strand, RNAz p=0.943633

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC052282, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC052282, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               83-1258, gnl|bosTau2|chr11 (51974506-51975679)
               

               
               83-1258, gnl|Hg17|chr2 (27512891-27511753)
               

               
               83-1258, gnl|Mm7|chr5 (30232665-30231497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-1258, gnl|bosTau2|chr11 (51974506-51975679)
               

               
               83-1258, gnl|Hg17|chr2 (27512891-27511753)
               

               
               83-1258, gnl|Mm7|chr5 (30232665-30231497)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fce (0.271592)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	242-441, - strand, RNAz p=0.785032
	682-997, - strand, RNAz p=0.968928
	1037-1258, + strand, RNAz p=0.943633

	83-1258, gnl\|bosTau2\|chr11 (51974506-51975679)
	83-1258, gnl\|Hg17\|chr2 (27512891-27511753)
	83-1258, gnl\|Mm7\|chr5 (30232665-30231497)

	fce (0.271592)
	ton (0.1755)
	fbs (0.175346)
	lnt (0.142308)
	nca (0.136874)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	ecc (0.115035)