Non-Coding RNA Search

Ss1.1-Mixc-0033e05.5

Sequence:


               
               CAGCAATAGATGAGGTTATAGAAAAGTCCTAGGGAAGGGAAGTTAAAAGAATGATTTTAC
CAGTGGTCGGGGGGGAAAGGTAAAATCTCCAGGCCATGCCCATCTTCTTAAATGGCATAA
CCTGGTTCCTCTTTGAAACACTGAAGCTCAGTTCAGTTGAGCAACATCAGTGCTGCCCCA
GGTGTCCTAAGGGTCAGCGCAAAAGGAGGGTCTACACCCGTGCAGACAGAAGTAAACAGA
GACAGGGGTCACAGGGCATCAGCAGCAGGAGGAGGCACAGCACGTGGGGCGGGGGCAGGT
GGAGATGACACAGGTGGGGCGATAGTAAGTGGTGTGGCAGGAGACCCGGCCACAGACGGG
GCGCAGGCAGCAGCAGGGGTGGCAGCAGCTGGAGCCACAGGGGCTGGAGCCACAGCAGGA
GGGCTGGCAGCACGGGGGCCTGCAGCCGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGA
GGGCTGGCAGCACGAGGACTGGCAGCATTGGGGCCTGCAGCAGCTAGAGATGCAGCAGCG
GGGCTGAGAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCATTGGGGCCTGCAGCAGCT
GGAGATGCAGCAGCGGGGCTGAGAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCATTG
GGGCCTGCAGCAGCTGGAGATGCAGCAGCGGGGCTGAGAGCAGGTGGGCTGGCAGCACAC
AGACTGGCAGCATTGGGGCCTGCAGCAGCTGGAGATGCAGCATCTGGGGCGGCAGCAAGT
GGGCTGGCAGCATTGGGGCCTGCAGCAGCTGGACACACAGCAGACTGGGCGGCAGCAGGT
GGGCTGGCAGCAGCTGGGGCAGCCACAACTCTGCTCAGAGCAGACGGAGCCACAACACGA
GCTGACCATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAATAGATGAGGTTATAGAAAAGTCCTAGGGAAGGGAAGTTAAAAGAATGATTTTAC
CAGTGGTCGGGGGGGAAAGGTAAAATCTCCAGGCCATGCCCATCTTCTTAAATGGCATAA
CCTGGTTCCTCTTTGAAACACTGAAGCTCAGTTCAGTTGAGCAACATCAGTGCTGCCCCA
GGTGTCCTAAGGGTCAGCGCAAAAGGAGGGTCTACACCCGTGCAGACAGAAGTAAACAGA
GACAGGGGTCACAGGGCATCAGCAGCAGGAGGAGGCACAGCACGTGGGGCGGGGGCAGGT
GGAGATGACACAGGTGGGGCGATAGTAAGTGGTGTGGCAGGAGACCCGGCCACAGACGGG
GCGCAGGCAGCAGCAGGGGTGGCAGCAGCTGGAGCCACAGGGGCTGGAGCCACAGCAGGA
GGGCTGGCAGCACGGGGGCCTGCAGCCGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGA
GGGCTGGCAGCACGAGGACTGGCAGCATTGGGGCCTGCAGCAGCTAGAGATGCAGCAGCG
GGGCTGAGAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCATTGGGGCCTGCAGCAGCT
GGAGATGCAGCAGCGGGGCTGAGAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCATTG
GGGCCTGCAGCAGCTGGAGATGCAGCAGCGGGGCTGAGAGCAGGTGGGCTGGCAGCACAC
AGACTGGCAGCATTGGGGCCTGCAGCAGCTGGAGATGCAGCATCTGGGGCGGCAGCAAGT
GGGCTGGCAGCATTGGGGCCTGCAGCAGCTGGACACACAGCAGACTGGGCGGCAGCAGGT
GGGCTGGCAGCAGCTGGGGCAGCCACAACTCTGCTCAGAGCAGACGGAGCCACAACACGA
GCTGACCATGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61869504|ref|XP_611233.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869504|ref|XP_611233.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               397-784, - strand, RNAz p=0.96775

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-784, - strand, RNAz p=0.96775

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               129-870, gnl|bosTau2|chr23 (838356-837602)
               


               
               178-869, gnl|bosTau2|chr19 (33501956-33501254)
               

               
               178-869, gnl|Hg17|chr17 (36515883-36515180)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-870, gnl|bosTau2|chr23 (838356-837602)
               


               
               178-869, gnl|bosTau2|chr19 (33501956-33501254)
               

               
               178-869, gnl|Hg17|chr17 (36515883-36515180)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.7357)
               

               
               ton (0.1755)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.7357)
               

               
               ton (0.1755)

	129-870, gnl\|bosTau2\|chr23 (838356-837602)

	178-869, gnl\|bosTau2\|chr19 (33501956-33501254)
	178-869, gnl\|Hg17\|chr17 (36515883-36515180)