Non-Coding RNA Search

Ss1.1-Mixc-0033f14.3

Sequence:


               
               CCCTGAGGTATCAGTTTTATTTGTCAGTGCCGGACTGAGCTAAGGCACAATCTGGTTGCC
TTGGAGAACCGAAGGAATGGGAGTGGGAGGGGGAAGCAGGCCCTCCTGGGTGATGGGCGC
TCCGGCTGCCTTCCTGGCAGGGGCAGGGGCCGGGGCTGGGGCTGGGGCTGGGGCCGGGGC
CTCAGACCCGAGCCCCAGCAGCCCAAAGGCTGTATTGAAGAGGTTGATGGGAGTGGAGCC
GTCTGTGATGAGGGTTGATTTTAAGCCCAGGCTCTGGAGCAGTTTTACCTGCATCTCTGG
CCCTGCCACAGCGAGGTCCCTGATGGTGCTGGGGCCCAGGGCCTCCGTCATCTGCCTGAA
CTTCTTCACCTCCACCTCGGCCAGCTGCTGGGCCTTGCTCACCTCCAGCTCCAGCTGGGC
CCGGGCATAGACCAGCTCAAGTTCTCGCACCTTCTTTACTCGCTGGAGTTCAGCCTCCGT
CTCAATGGCCAAGGCCTCTGCCTTCAGCTTGGCCTGCAGCACGGAGCCTTCGCCCTCGAT
GCGCGCCGCCTCTGCACGGGATTCGGCCTCTGCCTTGGCGGTCCCGGTGCTCTCCACCGC
GGTGCTCAGGGCCTCCAGCTCTAAGAGGTCCCTGCGCGCTTTTTCGGCTTCTGCCTGGTC
TAAGATCTTCTGCCTTTCAAGCCGGCCGCGGGCTTCCTGTTCCAGTCTCTGAGCTTCGTG
CTTGGCAGCTGCCTCCTGCGAGTTGGTGGTGATCTCGATGGCCAGCTGGACGCTGCGCTG
CAAGGCGTCCCGGGTCCTCTGGTCCACGGGCTCCACCGACTGCACATCCACACTGCTGAC
CACCAGCCCGTTCTGGGGGAAGACGGCCCGGTCCCGGGGCTGGGGCAGGGCCGTGCTGTC
TGGCCCCTTGGTTTCCGGGATCTCAAAGCCGAAGACAGCCGTGCGAATGATGCGGGCCGA
GTTCTTATGGAAGTCATCAAAGGTGACGGAGGCCACGGCTCCCCGCACCCGGGACGCGAT
GGCCTTGCAGGCATCGCCCACAAAGTCGGGCACTGAGAAAAGCCTGGCCGCCTCTTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGAGGTATCAGTTTTATTTGTCAGTGCCGGACTGAGCTAAGGCACAATCTGGTTGCC
TTGGAGAACCGAAGGAATGGGAGTGGGAGGGGGAAGCAGGCCCTCCTGGGTGATGGGCGC
TCCGGCTGCCTTCCTGGCAGGGGCAGGGGCCGGGGCTGGGGCTGGGGCTGGGGCCGGGGC
CTCAGACCCGAGCCCCAGCAGCCCAAAGGCTGTATTGAAGAGGTTGATGGGAGTGGAGCC
GTCTGTGATGAGGGTTGATTTTAAGCCCAGGCTCTGGAGCAGTTTTACCTGCATCTCTGG
CCCTGCCACAGCGAGGTCCCTGATGGTGCTGGGGCCCAGGGCCTCCGTCATCTGCCTGAA
CTTCTTCACCTCCACCTCGGCCAGCTGCTGGGCCTTGCTCACCTCCAGCTCCAGCTGGGC
CCGGGCATAGACCAGCTCAAGTTCTCGCACCTTCTTTACTCGCTGGAGTTCAGCCTCCGT
CTCAATGGCCAAGGCCTCTGCCTTCAGCTTGGCCTGCAGCACGGAGCCTTCGCCCTCGAT
GCGCGCCGCCTCTGCACGGGATTCGGCCTCTGCCTTGGCGGTCCCGGTGCTCTCCACCGC
GGTGCTCAGGGCCTCCAGCTCTAAGAGGTCCCTGCGCGCTTTTTCGGCTTCTGCCTGGTC
TAAGATCTTCTGCCTTTCAAGCCGGCCGCGGGCTTCCTGTTCCAGTCTCTGAGCTTCGTG
CTTGGCAGCTGCCTCCTGCGAGTTGGTGGTGATCTCGATGGCCAGCTGGACGCTGCGCTG
CAAGGCGTCCCGGGTCCTCTGGTCCACGGGCTCCACCGACTGCACATCCACACTGCTGAC
CACCAGCCCGTTCTGGGGGAAGACGGCCCGGTCCCGGGGCTGGGGCAGGGCCGTGCTGTC
TGGCCCCTTGGTTTCCGGGATCTCAAAGCCGAAGACAGCCGTGCGAATGATGCGGGCCGA
GTTCTTATGGAAGTCATCAAAGGTGACGGAGGCCACGGCTCCCCGCACCCGGGACGCGAT
GGCCTTGCAGGCATCGCCCACAAAGTCGGGCACTGAGAAAAGCCTGGCCGCCTCTTGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819801|ref|XP_609620.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819801|ref|XP_609620.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               319-478, - strand, RNAz p=0.781803
               

               
               320-435, + strand, RNAz p=0.983223

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-478, - strand, RNAz p=0.781803
               

               
               320-435, + strand, RNAz p=0.983223

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               280-478, gnl|bosTau2|chr25 (24569619-24569421)
               

               
               280-478, gnl|canFam2|chr6 (20914966-20915091)
               

               
               280-478, gnl|danRer3|chr3 (8635252-8635127)
               

               
               280-478, gnl|dasNov1|scaffold_39840 (6371-6249)
               

               
               280-478, gnl|echTel1|scaffold_322509 (54938-54829)
               

               
               280-478, gnl|galGal2|chr28 (25951-26082)
               

               
               280-478, gnl|hg17|chr16 (29766017-29766142)
               

               
               280-478, gnl|Hg17|chr16 (29766216-29766018)
               

               
               280-478, gnl|loxAfr1|scaffold_17012 (29359-29234)
               

               
               280-478, gnl|mm7|chr7 (123084227-123084102)
               

               
               280-478, gnl|Mm7|chr7 (123084026-123084224)
               

               
               280-478, gnl|monDom2|scaffold_5 (119849129-119849005)
               

               
               280-478, gnl|oryCun1|scaffold_121268 (1596-1469)
               

               
               280-478, gnl|panTro1|chr18 (30525032-30525157)
               

               
               280-478, gnl|rheMac2|chr20 (27798342-27798467)
               

               
               280-478, gnl|rn3|chr1 (186315451-186315326)
               

               
               280-478, gnl|tetNig1|chrUn_random (46211342-46211467)
               

               
               280-478, gnl|xenTro1|scaffold_1581 (29936-29811)
               


               
               721-1080, gnl|bosTau2|chr25 (24567585-24567226)
               

               
               721-1080, gnl|Hg17|chr16 (29763702-29763343)
               

               
               721-1080, gnl|Mm7|chr7 (123086103-123086462)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-478, gnl|bosTau2|chr25 (24569619-24569421)
               

               
               280-478, gnl|canFam2|chr6 (20914966-20915091)
               

               
               280-478, gnl|danRer3|chr3 (8635252-8635127)
               

               
               280-478, gnl|dasNov1|scaffold_39840 (6371-6249)
               

               
               280-478, gnl|echTel1|scaffold_322509 (54938-54829)
               

               
               280-478, gnl|galGal2|chr28 (25951-26082)
               

               
               280-478, gnl|hg17|chr16 (29766017-29766142)
               

               
               280-478, gnl|Hg17|chr16 (29766216-29766018)
               

               
               280-478, gnl|loxAfr1|scaffold_17012 (29359-29234)
               

               
               280-478, gnl|mm7|chr7 (123084227-123084102)
               

               
               280-478, gnl|Mm7|chr7 (123084026-123084224)
               

               
               280-478, gnl|monDom2|scaffold_5 (119849129-119849005)
               

               
               280-478, gnl|oryCun1|scaffold_121268 (1596-1469)
               

               
               280-478, gnl|panTro1|chr18 (30525032-30525157)
               

               
               280-478, gnl|rheMac2|chr20 (27798342-27798467)
               

               
               280-478, gnl|rn3|chr1 (186315451-186315326)
               

               
               280-478, gnl|tetNig1|chrUn_random (46211342-46211467)
               

               
               280-478, gnl|xenTro1|scaffold_1581 (29936-29811)
               


               
               721-1080, gnl|bosTau2|chr25 (24567585-24567226)
               

               
               721-1080, gnl|Hg17|chr16 (29763702-29763343)
               

               
               721-1080, gnl|Mm7|chr7 (123086103-123086462)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               jej (0.494609)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.494609)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	319-478, - strand, RNAz p=0.781803
	320-435, + strand, RNAz p=0.983223

	280-478, gnl\|bosTau2\|chr25 (24569619-24569421)
	280-478, gnl\|canFam2\|chr6 (20914966-20915091)
	280-478, gnl\|danRer3\|chr3 (8635252-8635127)
	280-478, gnl\|dasNov1\|scaffold_39840 (6371-6249)
	280-478, gnl\|echTel1\|scaffold_322509 (54938-54829)
	280-478, gnl\|galGal2\|chr28 (25951-26082)
	280-478, gnl\|hg17\|chr16 (29766017-29766142)
	280-478, gnl\|Hg17\|chr16 (29766216-29766018)
	280-478, gnl\|loxAfr1\|scaffold_17012 (29359-29234)
	280-478, gnl\|mm7\|chr7 (123084227-123084102)
	280-478, gnl\|Mm7\|chr7 (123084026-123084224)
	280-478, gnl\|monDom2\|scaffold_5 (119849129-119849005)
	280-478, gnl\|oryCun1\|scaffold_121268 (1596-1469)
	280-478, gnl\|panTro1\|chr18 (30525032-30525157)
	280-478, gnl\|rheMac2\|chr20 (27798342-27798467)
	280-478, gnl\|rn3\|chr1 (186315451-186315326)
	280-478, gnl\|tetNig1\|chrUn_random (46211342-46211467)
	280-478, gnl\|xenTro1\|scaffold_1581 (29936-29811)

	721-1080, gnl\|bosTau2\|chr25 (24567585-24567226)
	721-1080, gnl\|Hg17\|chr16 (29763702-29763343)
	721-1080, gnl\|Mm7\|chr7 (123086103-123086462)

	jej (0.494609)
	nms (0.213858)
	cty (0.20816)
	duo (0.172801)
	csp (0.161186)
	cag (0.151194)
	ute (0.132784)
	cov (0.132153)
	med (0.116252)
	jca (0.11396)