Non-Coding RNA Search

Ss1.1-Mixc-0033g23.3

Sequence:


               
               GTTTAAATCCCTGGACTCCAGGCCTTTGAGTCCAGCCAATAGTGTGAATGCTTCCAATTA
AGCTGTAGGAGTTTCCCTATACTTGGAACTGATTAGACAGCAGGGAGTCTCCAGGAGAAG
CCTGCAGTGCTATAAATATCAGTACAAGGCGAGGCATGGTTGCAGTCCTGGGTGCTGGAT
TTTACAAACTGCATTGGCCCTGGAGAGAAGGACCCTTGGCATTGCTTTGGTCAGCTAGCG
AGGGGAAGAAGGGGTGCTGGGGTAGGAGTGTGTTTATATATAATTTAGGTTTTGTTTGTA
CAGCATTCTGCGTCTTGTTATGACACGTCCTTGTCCTGCTTTGCTTTTGAGTTTTTTTAC
ACAACATGCAGAGGCACTGAAGTGGCCACGTCATTTTCACGTGTTGAGAATGTAGACAGT
GTTTCAGTACCAAAGTCTAAAAAAAGCAAGCAAACTAAAATTGTGAATTTTTTATAGGTG
TTATATTTGGATTTTTCTCAACTTTGAAACTGTTTAGCACAGTTCCGTTGTGTTATATAA
GAAGATGCTTTATCCAATAAGACTGGCTGAGCATTGACAAGCTTTATGTACCATCTGACT
TAACCAGCCATATTCAGGCAGGAGGGCTGTTCTGTGGCTCTAGGTATTTGGGGGCCTGCA
GTGAACTTGTAGAGCCACTAGATTTTGAGGAGTGTTCGTAGAGAGACTTGGAAGAGACCC
TGAAATGTATTTGTAGATTTGCTTCTCCTTGTGGTGGAAGACCCCCACAGGATGTTTCCT
TTGAGTGGCCATCCCTTCCCACCCACTGCATAATTCAGCAGAAACTAGAGGAGCTGGGAG
TGTAACTGTTTTGAATTGAAACTGTTCTCTCTACCTATCAGCTAACTGGTTAGCAGCCAA
GCGGTTAGGCAGCTTAGTGTAACAGCTTACACAGTTAACCCTTCATTTCTCTATGAGGTC
AGAGGGAACCTCTTGGTTAACCCTGTTGGAATTGATCTAAAGGATGTGATGGTTTGATTC
AGGTATAGTTAAACAAGCAGGGGGCTAATCCAGCTGTATTAATGGTTAGCTGTAAACTGG
AAACAATAGTCACATCCTCTCATCAGCGTGTGATGTCTAAGGTGGGAATTCAGGATGGAA
AGTGCAATTTTAAGCTTCACAGAAAAGCATTTGGGTATGTAAGGTGTTATTTCTGACCAG
AGCCCTAATTTTGCAATATGACCAAAACCAAGGAATATAAAGAACAATCAGGCTCTGGGG
GAATAATAGGCTTTAGACAATCTGTTCATTTCTGCATCAAAATTGGAATGAATGTATATA
TCTTCTTAAAAGTTGATAGAAGTGACTTCTACTTTCTGTCCAATATAATTGTCTTAAAAA
TATTTTTTTAATTTGAAACCCCGTTTCAAACCATGCCAACCTTAGTTCAGAACCTAAGAG
ATCATTCTTAGAATTGTTGGTAATTTGTTAAAATGGCAAATCCATTCATTTGTATTAAAA
AGAAAATATCCAAAAAGAGGGAGGGATCCCTGTTGCCTTGAGAGAAACAGCCTTGGCATT
TTCCGGCTACATTATTAATGTAGAAATAATGTTCCTATTATAACATATTTTCAAAGAAAC
ACTTTCTTATTTACTGCGTGGTGTAAAATGTTGCTAAGTTTGTTCTTACATTACTATGTC
ACTGCTGAAAGTTATTTGCACTATAATAAAGGAATTTTCTACAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTAAATCCCTGGACTCCAGGCCTTTGAGTCCAGCCAATAGTGTGAATGCTTCCAATTA
AGCTGTAGGAGTTTCCCTATACTTGGAACTGATTAGACAGCAGGGAGTCTCCAGGAGAAG
CCTGCAGTGCTATAAATATCAGTACAAGGCGAGGCATGGTTGCAGTCCTGGGTGCTGGAT
TTTACAAACTGCATTGGCCCTGGAGAGAAGGACCCTTGGCATTGCTTTGGTCAGCTAGCG
AGGGGAAGAAGGGGTGCTGGGGTAGGAGTGTGTTTATATATAATTTAGGTTTTGTTTGTA
CAGCATTCTGCGTCTTGTTATGACACGTCCTTGTCCTGCTTTGCTTTTGAGTTTTTTTAC
ACAACATGCAGAGGCACTGAAGTGGCCACGTCATTTTCACGTGTTGAGAATGTAGACAGT
GTTTCAGTACCAAAGTCTAAAAAAAGCAAGCAAACTAAAATTGTGAATTTTTTATAGGTG
TTATATTTGGATTTTTCTCAACTTTGAAACTGTTTAGCACAGTTCCGTTGTGTTATATAA
GAAGATGCTTTATCCAATAAGACTGGCTGAGCATTGACAAGCTTTATGTACCATCTGACT
TAACCAGCCATATTCAGGCAGGAGGGCTGTTCTGTGGCTCTAGGTATTTGGGGGCCTGCA
GTGAACTTGTAGAGCCACTAGATTTTGAGGAGTGTTCGTAGAGAGACTTGGAAGAGACCC
TGAAATGTATTTGTAGATTTGCTTCTCCTTGTGGTGGAAGACCCCCACAGGATGTTTCCT
TTGAGTGGCCATCCCTTCCCACCCACTGCATAATTCAGCAGAAACTAGAGGAGCTGGGAG
TGTAACTGTTTTGAATTGAAACTGTTCTCTCTACCTATCAGCTAACTGGTTAGCAGCCAA
GCGGTTAGGCAGCTTAGTGTAACAGCTTACACAGTTAACCCTTCATTTCTCTATGAGGTC
AGAGGGAACCTCTTGGTTAACCCTGTTGGAATTGATCTAAAGGATGTGATGGTTTGATTC
AGGTATAGTTAAACAAGCAGGGGGCTAATCCAGCTGTATTAATGGTTAGCTGTAAACTGG
AAACAATAGTCACATCCTCTCATCAGCGTGTGATGTCTAAGGTGGGAATTCAGGATGGAA
AGTGCAATTTTAAGCTTCACAGAAAAGCATTTGGGTATGTAAGGTGTTATTTCTGACCAG
AGCCCTAATTTTGCAATATGACCAAAACCAAGGAATATAAAGAACAATCAGGCTCTGGGG
GAATAATAGGCTTTAGACAATCTGTTCATTTCTGCATCAAAATTGGAATGAATGTATATA
TCTTCTTAAAAGTTGATAGAAGTGACTTCTACTTTCTGTCCAATATAATTGTCTTAAAAA
TATTTTTTTAATTTGAAACCCCGTTTCAAACCATGCCAACCTTAGTTCAGAACCTAAGAG
ATCATTCTTAGAATTGTTGGTAATTTGTTAAAATGGCAAATCCATTCATTTGTATTAAAA
AGAAAATATCCAAAAAGAGGGAGGGATCCCTGTTGCCTTGAGAGAAACAGCCTTGGCATT
TTCCGGCTACATTATTAATGTAGAAATAATGTTCCTATTATAACATATTTTCAAAGAAAC
ACTTTCTTATTTACTGCGTGGTGTAAAATGTTGCTAAGTTTGTTCTTACATTACTATGTC
ACTGCTGAAAGTTATTTGCACTATAATAAAGGAATTTTCTACAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-159, - strand, RNAz p=0.98626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-159, - strand, RNAz p=0.98626

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-272, gnl|bosTau2|chr3 (22803953-22804226)
               

               
               3-272, gnl|Hg17|chr2 (64598451-64598712)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-272, gnl|bosTau2|chr3 (22803953-22804226)
               

               
               3-272, gnl|Hg17|chr2 (64598451-64598712)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               sug (0.763747)
               

               
               isp (0.601504)
               

               
               ste (0.540833)
               

               
               rec (0.519211)
               

               
               aor (0.390549)
               

               
               ldo (0.38801)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.763747)
               

               
               isp (0.601504)
               

               
               ste (0.540833)
               

               
               rec (0.519211)
               

               
               aor (0.390549)
               

               
               ldo (0.38801)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	3-272, gnl\|bosTau2\|chr3 (22803953-22804226)
	3-272, gnl\|Hg17\|chr2 (64598451-64598712)

	sug (0.763747)
	isp (0.601504)
	ste (0.540833)
	rec (0.519211)
	aor (0.390549)
	ldo (0.38801)
	gul (0.355177)
	fhi (0.339155)
	fco (0.314416)
	sme (0.305437)
	ski (0.29347)
	ret (0.257467)
	thg (0.253582)
	fbs (0.175346)
	bfe (0.149858)
	spl (0.143184)
	ova (0.129132)
	bla (0.124347)
	ebs (0.118301)